| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1354 |
|---|
| Symbol | fliR |
|---|
| ID | 4479487 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 1565794 |
|---|
| End bp | 1566591 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639725909 |
|---|
| Product | flagellar biosynthesis protein FliR |
|---|
| Protein accession | YP_868994 |
|---|
| Protein GI | 117919802 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
|---|
| TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.541538 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.208053 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGCTGC TGCTCGACAC CTTAATGCAA ACCATCGCCT CTTACATGTG GCCATTGTTT
CGTGTGACCA GCATGTTGAT GGTCATGGTG GTGTTTGGTG CTACAACAAC CCCGACTCGA
GTCCGTTTAC TGTTAGCCGT TACCATCACG CTTGCCATTG CGCCAGTTTT GCCCCCCGTA
AAGGATGCCG AACTCTTTTC CTTAAGCGCT GTTTTTATTA CCGCTCAGCA AATTATTATT
GGTGTCGCCA TGGGTTTTGT GACCCAAATG GTGATGCAAA CCTTTGTGTT AACGGGCCAG
ATCATTGGTA TGCAAACCAG TTTAGGTTTT GCTTCTATGG TTGACCCTGG CTCTGGTCAA
CAAACGCCAG TGATAGGTAA CTTCTTTTTG TTACTCGCAA CGTTGATTTT TCTCGCCGTC
GATGGACACC TGTTGATGAT CCGCATGCTT GTCGCCAGTT TTGAGACCTT ACCGATTTCG
AATCAAGGAT TAACCTTGAC AAGTTATCGC TCGCTGGCTG AATGGGGCTC CTATATGTTT
GGCGCGGCAC TGACTATGTC GCTCTCGGCG ATTATTGCCT TACTACTTGT TAACTTATCC
TTTGGGGTAA TGACCCGCGC CGCGCCGCAG CTGAACATTT TCTCGATAGG TTTCCCCATC
ACTATGATTG GTGGACTGCT GATTTTATGG TTGACCTTGA CTCCCGTAAT GGCCCATTTC
GAAGAAGTCT GGGCGTCGGC ACAGCTTTTG CTTTGCGATA TTTTAGGGCT TCAGTGTCAA
GCCAATGGCA TATTCTAA
|
|---|
| Protein sequence | MELLLDTLMQ TIASYMWPLF RVTSMLMVMV VFGATTTPTR VRLLLAVTIT LAIAPVLPPV
KDAELFSLSA VFITAQQIII GVAMGFVTQM VMQTFVLTGQ IIGMQTSLGF ASMVDPGSGQ
QTPVIGNFFL LLATLIFLAV DGHLLMIRML VASFETLPIS NQGLTLTSYR SLAEWGSYMF
GAALTMSLSA IIALLLVNLS FGVMTRAAPQ LNIFSIGFPI TMIGGLLILW LTLTPVMAHF
EEVWASAQLL LCDILGLQCQ ANGIF
|
|---|
| |