| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1303 |
|---|
| Symbol | |
|---|
| ID | 4479877 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 1517856 |
|---|
| End bp | 1518998 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639725857 |
|---|
| Product | polysaccharide biosynthesis protein |
|---|
| Protein accession | YP_868943 |
|---|
| Protein GI | 117919751 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
|---|
| TIGRFAM ID | [TIGR03588] UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.288123 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCCCT ATGGCAGACA GGATATTGAC AGTACCGATA TTGCAGCTGT GGTTGAGGTG
CTTGAGTCAG ATTTTTTGAC CCAGGGACCC AAGGTTCCGG AATTTGAAAA TGCCGTCTGT
GACTATACAG GTGCTAATTT CGGTGTCGCT GTTAACAGTG CAACCTCTGC CTTGCATATT
GCCTGTCTCG CATTGGGGAT TGGGCAGGGC GATTTGGTAT GGACCTCGCC CATCACTTTC
GTCGCCTCGG CCAATTGCGC CCTGTACTGT GGCGCTGAAG TGGATTTTGT CGATGTGGAC
CCTGCCACGG GCAACATGTG TTCCCAGGCT CTCGCCATCA AACTTGCCCA AGCAAAAGTG
ACAGGAACTT TGCCCAAAGT TGTCATTCCA GTACATCTGT GTGGCCACAG CTGCGATATG
GCCGCAATAG CATCGCTCGC TGCTGAATAT GGTTTCAGGG TCATAGAGGA CGCCTCCCAT
GGTATAGGTG GCGGTTTCCA AGGGCATAAA CTCGGAAGTT GTTATTACTC GGACATCACT
GTATTCAGCT TTCACCCGGT CAAGATAATC ACCTGTGCCG AAGGTGGTAT GGCCATGACC
AACAGCGCTG AGCTGGCCGA AAAGTTGAGA CTGCTTCGCA GCCACGGGAT AGTTAGGTTG
CCGCAGCAGA TGCTAAGACC AAATGAAGGG GACTGGTATT ACGAACAGCA TGAGCTGGGG
TTTAACTACC GTATGACTGA GCTGCAGGCG GCGTTAGGTG TGTCCCAGAT GAAACGCATC
GATGCTTTTG TTAAGCGTCG TAACGAGCTG GCCAACCGAT ATCGTCAGGG ATTGTCAAGC
CTTTGCCATT GTTTGGAATC CTTGGCCGGT TCCGACAGTG CTTGGCATTT GCTGATTATC
TGCCTGCGGG ACAAGTCTCA CAGAAAACAC ATTTTCGATG ATATGAGGGC TGCCGGAATT
CAGGTGCATG TTCATTACTT TCCTGTGCAT CTGCAGCCTT TCTACATGAA CAAAGGATTC
AAGCAAGGAC AGTTCCCAGT AGCGGAAGAT TTTTATAGCC GCATCCTCAG TTTGCCATTG
TTTCCCGGGC TAACCGAGGA GCAGCAAGCC TATGTTATTG AGACCTTGTC GAAAGCCCTC
TAG
|
|---|
| Protein sequence | MIPYGRQDID STDIAAVVEV LESDFLTQGP KVPEFENAVC DYTGANFGVA VNSATSALHI
ACLALGIGQG DLVWTSPITF VASANCALYC GAEVDFVDVD PATGNMCSQA LAIKLAQAKV
TGTLPKVVIP VHLCGHSCDM AAIASLAAEY GFRVIEDASH GIGGGFQGHK LGSCYYSDIT
VFSFHPVKII TCAEGGMAMT NSAELAEKLR LLRSHGIVRL PQQMLRPNEG DWYYEQHELG
FNYRMTELQA ALGVSQMKRI DAFVKRRNEL ANRYRQGLSS LCHCLESLAG SDSAWHLLII
CLRDKSHRKH IFDDMRAAGI QVHVHYFPVH LQPFYMNKGF KQGQFPVAED FYSRILSLPL
FPGLTEEQQA YVIETLSKAL
|
|---|
| |