Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_1291 |
Symbol | |
ID | 4479865 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 1501877 |
End bp | 1503157 |
Gene Length | 1281 bp |
Protein Length | 426 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 639725845 |
Product | conjugation TrbI family protein |
Protein accession | YP_868931 |
Protein GI | 117919739 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2948] Type IV secretory pathway, VirB10 components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCCAGG ATGACACTCC CGACCTCGCC GCTCCGCCGG CGGGCAAGGT GGCGCCCGAG GCTGTGGCGC TGCGTGCCCA GCCGCGTCCG GTCACGCGCC TGAACCGGCG CACGCTGGCC ATCCTCGCGG GCGGCCTGTC GGTCGCCGTG CTTGGGGCCA CGATCTGGTC GCTGCAACCG CATCGGCGCG GTACGGGCGA GCAAACCGAG CTTTACAACG TCGATCGCGT CTCGAAGTCC GAAGGGCTGG ATGCGCTACC GACGGACTAC TCGAAGCTGC CGCCAGCCTT GCCGCACGAT GTACCCGAGC TGGGGCCGCC GCTGCCGGGC GACCTCGGCC CGGCCATCGT GAAGTCGCAG CAGCCGGTGA CAGCCGCCTA CGCGGCTCCC GGCCACGACC CGAACGATGC GCTGCGCAAG GAAGCCGAAG CTGCCGCAGC ATCGTCCGTG TTCTTCCGCT CGGGTGCGCA GGCGGCCGCG CCGGTCGCGC AGTCGCAGGC CGCCACCGCG CCGGGCTTCG CCGCCAATGC GGCGTTCGAC CCGATGGCCG CCGGGCCGGC CTCGACGGCG GCCCAGCCTG CCGATCCGAC CGCCGTGCAG AACCGGCAAG ACCAGAAGGA GGCTTTCCTG AAAGGCGGCT CTACGGAAAC CCGCAATTCC GGCAACCTGA CCCTGCCGGC TTCGCCGTAT CAGGTCATGG CCGGAACGGT GGTTGCCGGA GCGCTGGTGA CGGGCATCAA GTCGGACTTG CCCGGCGACG TGATCGCCAC TGTGACAGAG CCGGTCTATG ACACGGCCAC CGGGCGTTTC CTGCTGATCC CGCAGGGTTC GCGCATCCTG GGCAAATACA ACAGCCAGGT CAGTTACGGG CAGAGCCGCG TTCAAGTCGT CTGGAATCGG ATCATTCTGC CGGACACGTC TTCGTTGACG CTCGACAATC TGGCCGGCGC AGATCCGGCC GGCTATGCCG GCCTGGAAGA CGATGTGGAC TACCACTGGG GCCGCATCTT TGCCGGTGCG GCGCTGACGA CCCTGCTGGG CGTCGGCGCC GAACTGGCCG CGCCGGAGAA TCGACAAGAT GGCGATCGCG TCATCATCGC CGGGCGTGAC AGTTTGCAGG ACACGGTGAA TCAAATCGGC CAGGAAGTGA CCCGGCGCAA CCTCAACATC CAGCCCACCT TGACCCAACG GCCCGGCCTG CCGGTGCGGA TCATCGTCAA CCGCGACTTG GTGTTGCGGC CGTACCAGCC GCTGTTCTTC AATCGGGGGA CTTCACGATG A
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Protein sequence | MSQDDTPDLA APPAGKVAPE AVALRAQPRP VTRLNRRTLA ILAGGLSVAV LGATIWSLQP HRRGTGEQTE LYNVDRVSKS EGLDALPTDY SKLPPALPHD VPELGPPLPG DLGPAIVKSQ QPVTAAYAAP GHDPNDALRK EAEAAAASSV FFRSGAQAAA PVAQSQAATA PGFAANAAFD PMAAGPASTA AQPADPTAVQ NRQDQKEAFL KGGSTETRNS GNLTLPASPY QVMAGTVVAG ALVTGIKSDL PGDVIATVTE PVYDTATGRF LLIPQGSRIL GKYNSQVSYG QSRVQVVWNR IILPDTSSLT LDNLAGADPA GYAGLEDDVD YHWGRIFAGA ALTTLLGVGA ELAAPENRQD GDRVIIAGRD SLQDTVNQIG QEVTRRNLNI QPTLTQRPGL PVRIIVNRDL VLRPYQPLFF NRGTSR
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