| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1213 |
|---|
| Symbol | |
|---|
| ID | 4477133 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 1417962 |
|---|
| End bp | 1419455 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 639725768 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_868854 |
|---|
| Protein GI | 117919662 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTATTTA TTAGCATGTT AACCCTTGTA TCTGAGGAGT CATTCTTGTT TAGACCTTTA
TCGCTCCTAT TTATTGGACT TGGATTAACG CTAACAAAAC CCTCTTTAGC GGAATTTTCC
TTGGCTCAAA TTCCCCCGCT ATCGAATAAA ACCCCCATCA CCTTAGTCGC CGAAAAAGGC
TTTTGGACCG ACTATCTGAC CCGCGAAATG CTGCCTAAAT TCACCGAAAA AACCGGTGTC
AAAGTCAATG TGGTTAGCAC CGAGCTTGAG AGCATGTTTG AGCTTCAGAC CCAAGCGTTG
CTGCAAGGTG AAGGTAAGTA CGATTTGCTC ACTATGGAGG CGGGTTGGGC CAAAGAGTGG
GCTGCCAATG GCTATACCGT GCCGCTACCA GAATTAGCCA AACTATACGA TCCCGATGGC
GAAAAAGCGA TGGAAAGGTA TCTCGAACCT TACTATCCAT CACTTCTTAA CATTTTGTCT
TATCACGGCG AGTTACACGC CATCCCCTAC AATAACTATG TGATGGGCAG CCACTACCGT
GCCGATCTGT TTGAAAATAA GACCGAGCAA ACCCACTTTC AGCAACGTTT CGGTTATCCA
CTCAAACCTG CGACCAATTT TGATGAACTG CAGGATCAAG CGGTATTTTT TACTCGAAAG
AGCGGTGAAC TCCTCGCCGA TAAACAGCTA AGCCACAACT TTTATGGTCT TGCCTTAATG
TCAGGCAATA AGCCCCATAT TAACGATGAG TTTTCTAGCA TTATCTGGAG CTTAGGTGGT
GCTTGGATGT GGCCCATCTA TAATCAACAA AAACAGTTGA CGCATTTTGA GGTGCCCGCT
GTCAATCAAG AGGCGCTAAA AGCGGCCATT ATTTACCGTA AGCTGATGCC CTACGCTATC
CCTGCGGATG ACAAATTTGC CTTTAACGAA GCGGCCAATG CAATGGCTTC AGGGCAAGTG
GCTATTTGGC CTTTTGCTTA CAACAATCTA TGGTCGGCCT CCTTTAAAGT CGAGGCCAAT
GTGCCGGGTG CTCGACTTGG CGTAGCTCAA GTGCCAGGCG GTACCCCCTA TAACGGCGCC
TACGCCTTTG CAGTGAGCTA CGACAGTAAA AATCCGCAAG CCGCCTATTG GTTACTTAAA
TACATGGGCA CCTATGAAGC CCAATACGCC TATGCCCTCG GTGGCGGCAA TCCCTGCAGA
ATGGACGTAG TAACGGCGCC CGAATTTAAC CAAGCCTCAA AAAGAGCCAT TGCTGGCGCA
TTCGAGGCGA GCCATATCGC AAATTTATTT TGGTCAACTA AAGTCTTGGA TGTCGGGCAC
TTTACCACGA CCGCCATGGG ACAAATTTAC CCAGAATTAA GCCATGCGTG TTACGCCGCA
AGCCGGCATG AAGCGGACAG CGCCGATATT TTTATTGAAT TGAGTGCCAA AATTAAGCAT
CTGCAGAATA CCTATGGGGA AGTGCCTGCA ATTGATAAGA ACAATAGCCA ATGA
|
|---|
| Protein sequence | MLFISMLTLV SEESFLFRPL SLLFIGLGLT LTKPSLAEFS LAQIPPLSNK TPITLVAEKG
FWTDYLTREM LPKFTEKTGV KVNVVSTELE SMFELQTQAL LQGEGKYDLL TMEAGWAKEW
AANGYTVPLP ELAKLYDPDG EKAMERYLEP YYPSLLNILS YHGELHAIPY NNYVMGSHYR
ADLFENKTEQ THFQQRFGYP LKPATNFDEL QDQAVFFTRK SGELLADKQL SHNFYGLALM
SGNKPHINDE FSSIIWSLGG AWMWPIYNQQ KQLTHFEVPA VNQEALKAAI IYRKLMPYAI
PADDKFAFNE AANAMASGQV AIWPFAYNNL WSASFKVEAN VPGARLGVAQ VPGGTPYNGA
YAFAVSYDSK NPQAAYWLLK YMGTYEAQYA YALGGGNPCR MDVVTAPEFN QASKRAIAGA
FEASHIANLF WSTKVLDVGH FTTTAMGQIY PELSHACYAA SRHEADSADI FIELSAKIKH
LQNTYGEVPA IDKNNSQ
|
|---|
| |