Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_1195 |
Symbol | |
ID | 4478712 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 1401977 |
End bp | 1403014 |
Gene Length | 1038 bp |
Protein Length | 345 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 639725750 |
Product | pilus retraction ATPase PilT |
Protein accession | YP_868836 |
Protein GI | 117919644 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.035221 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.726938 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAATCA CTGAGTTATT AGCCTTTAGT GTAAAACACA AAGCCTCGGA TCTACACCTC TCTGCAGGGA TATCTCCCAT GATCCGTGTC GACGGTGAAG TGAGAAAAAT TAACCTGCCC GCGCTCGATC ATCAGGGTGT ACACAGCCTT GTGTACGACA TTATGAATGA TAAACAGCGT AAGGACTTTG AAGAGCATTT AGAAATCGAC TTTTCGTTCG AAGTCCCTAA TTTAGCGCGT TTCCGTGTGA ACGCCTTTAA CCAATCCCGC GGCGCGGCGG CGGTATTTCG TACCATTCCC AGCGAAATTT TGTCACTCGA GCAGTTAGGG GCGCCAGAGA TTTTTAAAAA AATTTCCAGC TTTCCCCGCG GCTTAGTGCT TGTTACTGGG CCTACTGGTT CGGGTAAGAG TACCACACTT GCGGCCATGG TGGATTACAT CAATGAGAAC CGCCACGACC ATATCTTAAC CATTGAAGAT CCTATTGAAT TCGTTCACCA GAATAAGCAA TGTTTGATTA ACCAACGGGA AGTGCATCGC CATACCCACA GCTTTAACGC GGCGCTACGT AGCGCACTGC GTGAAGACCC TGACGTTATT CTCGTCGGTG AGATGCGTGA CCTTGAAACC ATTCGTCTGG CTATGACGGC GGCTGAAACG GGTCACTTAG TTTTTGGTAC CTTGCATACC ACCTCGGCGG CTAAGACCAT CGACCGTGTG GTTGACGTTT TCCCTGCCGG TGAAAAGGAC ATGGTGCGTA CCATGTTATC TGAATCATTA CAGGCGGTTA TTTCGCAAAC CCTGATTAAG AAAATCGGTG GTGGCCGTGT GGCTGCCCAC GAAATCATGA TGGGTACGCC CGCTATCCGT AACCTTATCC GTGAAGATAA AGTAGCGCAG ATGTACTCGG CCATTCAAAC GGGGATGGCC CATGGCATGC AAACGCTCGA ACAGTGTCTG CAAAACTTAG TGAACCGTGG CCTCATCACC CGTGAGGATG CCATGTCGAA GAGTTCAAAC AAACAAGCGA CGTTTTAA
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Protein sequence | MEITELLAFS VKHKASDLHL SAGISPMIRV DGEVRKINLP ALDHQGVHSL VYDIMNDKQR KDFEEHLEID FSFEVPNLAR FRVNAFNQSR GAAAVFRTIP SEILSLEQLG APEIFKKISS FPRGLVLVTG PTGSGKSTTL AAMVDYINEN RHDHILTIED PIEFVHQNKQ CLINQREVHR HTHSFNAALR SALREDPDVI LVGEMRDLET IRLAMTAAET GHLVFGTLHT TSAAKTIDRV VDVFPAGEKD MVRTMLSESL QAVISQTLIK KIGGGRVAAH EIMMGTPAIR NLIREDKVAQ MYSAIQTGMA HGMQTLEQCL QNLVNRGLIT REDAMSKSSN KQATF
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