| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1161 |
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| Symbol | |
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| ID | 4477874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 1369855 |
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| End bp | 1372491 |
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| Gene Length | 2637 bp |
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| Protein Length | 878 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 639725712 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_868802 |
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| Protein GI | 117919610 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGATG TTGCAATTTC ACAAAAACAG TTGACGGATT GGGCAAACGA CTTGCAGTTG
ATTGCCGATA TAACGCAGTC GCATGCGGTG ATTTTACAAG CCAGCGCGGC GGGTGACTAT
CGCGTACTTG TACAGTCAGC ACAATGCAAA TTGGCTGATA TTGAAGCCCT TATTAGGCAT
TTTAATCTCC AAGCGCATTT AACCTTACAT CAAAATGCCA CCCCTAAGGT CAAAGTCGCT
TCCTCTGTAG ACGCTGCTGA TAACCCCTTT AATGAATCAC GTACTTTTAG CCACCATCAG
GTAAATCTGC CTGAGGATAT CCGCAGCGGC AGTGCCTATC AGCACGCCCT TATCCAAGAT
ATCAGCGCGA ATCAGCAATG GTGCGACACT GGGCTCGGGA GCTTAATTTA CCTGCCGATC
CTCTGGACCT CGGGGGCACA TTTTGGCGTC TTATGTGTAT ATCACAGCGA TCCTCTACAT
TTAGGGGATA GGGCGTTGCA ACTTGCGTCT CTAACGGTCA ATAGCCTGCA ACTTAATTTG
AGCGAGTGGT TAAAGCAGCA AAAACAGGCG TTGGATATGC AGCGTGGGCA AGTTTATGCG
CCCGATGTGA TTGACTTACA AACCTTTATC GATAGTTTTG AAGAGCATAT TTGGGTCAAA
AATTCCCAAG GTGTTTACAC CATCTGCAAC CACAGTGTGG AGAAAGCCTG GGAGTTGCCC
CGCAGTGAAA TTGTTGGCAA GACGGATGAA GACCTTTTTG GTAAAGAAAT CGCCGAGATT
TTTCTCAATG GTGATAGGCT TGCCATTGAA GCGGGGACAC CGATTATCGT CGCCGAGTGT
TTAGACGGTG AAAAACAGAA TAAACACTTA TGGTTAGAAA CCCTTAAAAT TCCAGCAATG
ACCTCTGAGG GCGCACTTGC CGGTGTCATA GGCATGACCC GCAATATCTC CAAGCATAAA
GAGGTTGAAG AGCAGCTCAC GCTGGCGACC AATGTGTTTA AACATACCCT CGAAGGTGTG
GTGATCACCG ACAGGCATGG CAATATCACC GATGTGAATG GTGCCTTCTA TGAAATCACT
GGCTACTCTC GGGAAGAGTT GCTCGGTCAA AATCCACGAT TATTTAACTC GGGTCGCCAC
GAGAAAGCCT TTTTCGATGC CATGTGGAAT CACTTACTCG AGACGGGTAA GTGGAATGGC
GAAATTTGGA ATCGCCGCAA GGATGGCACT ATCTTCCCGC AAAATATCAC CATCAGCACC
ATTTATGATG AGTTAGGTGA TGTGCGCTAT TTTGTGGCGG TATTTTCCGA TATTTCCGCT
CAAAAGCAGA GCGAGGCCCA GCTAGCCCAT TTAGCTTATT TCGATCCTTT GACCCATCTG
CCAAACCGCA TGAAGCTGAT GATGCAGCTC AAACAGGAAC TCAGACATGC AAAAAGGCTC
AATGCCCAAC TAGCCACAGT GTTTATTGAT GTGGATTTGT TTAAACACAT TAACGACAGT
TTCGGCCACA GTATTGGTGA CGAAATGCTG GTGGAGCTGG CTAAGCGGTT ACGCAGTCAG
CTGCAAGAGC AAGATGTGTT GTCGCGAATT GGCGGCGATG AGTTTGTAGC ACTGATCTCG
GGAATTCAAA GCCATGAGGA TGCCGCCGCG GCCATTAACC AATTACGCCA AGTTTTTGAA
CAGCCCTTTG TGGTGAGCAC TGGGGATCAT CTGCGTCTGA CAGCCAGTAT GGGAGTGTCC
ATCTATCCCG ATGATGGCAG TAATGCCGAT ACCTTACTGC GTAACGCCGA TGCCGCCATG
TACCGCGCTA AGAGTGAGGG CCGCAATAAC TTTGCCTTTT ACACTGAGTC GCTCACTAAG
CAATCATTTG AGCATCTAAA ACTGCAGAGT GCGCTTTATG GCGCCCTTGA GCAGAACGCT
TTGTATTTGA TGTATCAGCC TAAATTGGAT TTAGTCAGTC GTAAAACCAT AGGGGTTGAG
GCGTTACTGC GTTGGAATGA CCCCATATTA GGGCAAATTT CCCCTGGGGT GTTTATTCCC
GTCGCCGAGA AAATCGGGCT GATTTACGAT ATTGGTTTGT GGGTGCTCGA AACCGCTTGC
CTTCAAGGCG TGCGTTGGCT TACCGAGGGG AAACCTTTTG GCCGAATTGC CGTTAACGTT
GCCGGACAAC AGCTACAACG TAGCTCCTTT GTCGAGGATG TGAAACGCAT CCTGACGCAA
ACAGGATTGC CCGCCACTTG CCTTGAGCTT GAAGTGACTG AAAGCGTGAT GATGCACAAT
CCCGATGTGG CGATTCGCGA CTTAAAGCTG CTAGGGGATC TTGGCATTGA GCTTTCGGTC
GACGATTTTG GAACCGGTTA TTCCTCTCTT AACTATCTGA AAAAACTGCC GATTCATAAG
CTTAAAATTG ACCAATCCTT TGTGCGGGAT ATCCCCTTCG ACACCAACAA TACCGCTATC
GCTAAAGCCG TAATTGCCCT AGGGCATGCG CTCAAGTTAG AGATAGTGGC AGAAGGGGTT
GAGACTCAAG CACAGGCTGA GTTTTTAACC CAAAACCTGT GCGATCAGGC GCAGGGGTAT
CTCTTCAGCC GTCCGCTATT ACCCGCGGAT GTTGAGGCGT TTTTAGCGAA AGCTTAA
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| Protein sequence | MIDVAISQKQ LTDWANDLQL IADITQSHAV ILQASAAGDY RVLVQSAQCK LADIEALIRH
FNLQAHLTLH QNATPKVKVA SSVDAADNPF NESRTFSHHQ VNLPEDIRSG SAYQHALIQD
ISANQQWCDT GLGSLIYLPI LWTSGAHFGV LCVYHSDPLH LGDRALQLAS LTVNSLQLNL
SEWLKQQKQA LDMQRGQVYA PDVIDLQTFI DSFEEHIWVK NSQGVYTICN HSVEKAWELP
RSEIVGKTDE DLFGKEIAEI FLNGDRLAIE AGTPIIVAEC LDGEKQNKHL WLETLKIPAM
TSEGALAGVI GMTRNISKHK EVEEQLTLAT NVFKHTLEGV VITDRHGNIT DVNGAFYEIT
GYSREELLGQ NPRLFNSGRH EKAFFDAMWN HLLETGKWNG EIWNRRKDGT IFPQNITIST
IYDELGDVRY FVAVFSDISA QKQSEAQLAH LAYFDPLTHL PNRMKLMMQL KQELRHAKRL
NAQLATVFID VDLFKHINDS FGHSIGDEML VELAKRLRSQ LQEQDVLSRI GGDEFVALIS
GIQSHEDAAA AINQLRQVFE QPFVVSTGDH LRLTASMGVS IYPDDGSNAD TLLRNADAAM
YRAKSEGRNN FAFYTESLTK QSFEHLKLQS ALYGALEQNA LYLMYQPKLD LVSRKTIGVE
ALLRWNDPIL GQISPGVFIP VAEKIGLIYD IGLWVLETAC LQGVRWLTEG KPFGRIAVNV
AGQQLQRSSF VEDVKRILTQ TGLPATCLEL EVTESVMMHN PDVAIRDLKL LGDLGIELSV
DDFGTGYSSL NYLKKLPIHK LKIDQSFVRD IPFDTNNTAI AKAVIALGHA LKLEIVAEGV
ETQAQAEFLT QNLCDQAQGY LFSRPLLPAD VEAFLAKA
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