| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1124 |
|---|
| Symbol | |
|---|
| ID | 4477829 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 1322334 |
|---|
| End bp | 1323314 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 639725667 |
|---|
| Product | RNA polymerase, sigma 38 subunit, RpoS |
|---|
| Protein accession | YP_868765 |
|---|
| Protein GI | 117919573 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02394] RNA polymerase sigma factor RpoS
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGCA TAAATAGCAC TGCCGCAGAA GAACTAGTAG ATTTTTCCGT AGATACCGCA
GAGTTTGATC TCGATAAAGA GGATATTGCC GCTGATTTAG TTCAAGAACT AGGACTCGAA
CAACAGGTTC AAGATGACCT GCAAAAAAAT CTTGATGCCA CTCAGCTCTA TTTAGGTGAA
ATAGGATTTT CCCCACTGCT TAGCGCAGAA GAAGAAGTTT ACTTTTCCCG TAAGGCCTTA
AAAGGCTGCG AAAAATCCCG TAATCGCATG ATTGAGAGTA ACCTGCGACT CGTGGTTAAA
ATTGCCCGTC GTTACAATAA TCGCGGCCTA GCGCTGCTGG ATTTAATCGA AGAGGGTAAT
CTTGGCTTGA TCCGTGCGGT GGAAAAATTC GATCCAGAAA GAGGCTTCCG TTTCTCAACC
TATGCGACTT GGTGGATCAG ACAAACGATT GAACGTGCCA TCATGAATCA AACCCGCACG
ATTCGCTTGC CAATCCATGT TGTAAAAGAA CTCAACGTGT ATTTACGTAC GGCTCGGGAA
TTAGCGCAAA AACTTGACCA CGAACCTACG GCAGAAGAAA TTGCCGAAAA ACTGCAAGTA
TCCAGTGTTG ACGTCAGCCG TATGCTGAAG CTCAATGAGA AGATCACCTC TGTCGATATC
CCCTTAGGTG GCGATAACGA CAAGGCGTTA CTCGATGTGC TGGCCGATGA CGACAACGTA
GGCCCTGACT ACAAAGTACA AGATGAAGAC ATTTCAAACT CAGTGGTGAA ATGGCTTAAT
GAACTCAATA CCAAGCAAAG AGAAGTGTTA GCGCGCCGCT TTGGTTTGTT AGGTTATGAA
CCCTCAACCC TTGAAGACGT CGGTGCTGAA ATTGGCCTCA CCCGTGAACG TGTTCGCCAA
ATTCAAGTGG AAGCCCTAAA ACGCCTACGT GATTTGCTGG GCGCTCAAGG TCTCTCTGTA
GAGGCACTCT TTAGAAACTA A
|
|---|
| Protein sequence | MSRINSTAAE ELVDFSVDTA EFDLDKEDIA ADLVQELGLE QQVQDDLQKN LDATQLYLGE
IGFSPLLSAE EEVYFSRKAL KGCEKSRNRM IESNLRLVVK IARRYNNRGL ALLDLIEEGN
LGLIRAVEKF DPERGFRFST YATWWIRQTI ERAIMNQTRT IRLPIHVVKE LNVYLRTARE
LAQKLDHEPT AEEIAEKLQV SSVDVSRMLK LNEKITSVDI PLGGDNDKAL LDVLADDDNV
GPDYKVQDED ISNSVVKWLN ELNTKQREVL ARRFGLLGYE PSTLEDVGAE IGLTRERVRQ
IQVEALKRLR DLLGAQGLSV EALFRN
|
|---|
| |