| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1111 |
|---|
| Symbol | |
|---|
| ID | 4476446 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 1306864 |
|---|
| End bp | 1309071 |
|---|
| Gene Length | 2208 bp |
|---|
| Protein Length | 735 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639725654 |
|---|
| Product | (p)ppGpp synthetase I, SpoT/RelA |
|---|
| Protein accession | YP_868752 |
|---|
| Protein GI | 117919560 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00000524023 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.850048 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCTCTG TTCGCGAAGC GCACTTTAAT GATCCCGATT TTCATCTTGA AGATTGGGTG
GCTCGCTATG TCAGTCATGT CGAGGAGGCC CAGACCTTAC TCACCCTGAT TGCACAGGTG
GAAGCCTTAC CCGCTAAGAG TCCTGCCGCG AAAAGAGAAC TGCTCGAACG TGCCCGTGAG
ATGATTGAAA TCCTCGCGCC ATTGAACATG GATATCGAGA CGCTGCAAGC GGCCATTCTG
TTTGTGGTGT TTGATGCTGG CTTACTAAAT GAAGAGGCGA TCAAAGAAAA ATTTGGCGAG
CCGCTGGCGC GGTTAGTTGC CAGCGTCGTG ACCATGGATG CGATTGGCGC GTTAAAAATC
AATCCCAATA GCCGCTCAAG CGAGCCGCAA ATCGACAATA TCCGCCGCAT GTTGCTGGCA
ATGGTCGAAG ACGTGCGCGC CGTGGTGATA AAACTAGCCG AGCGTGTTTG TTTGCTTCGC
GCCGTGAAAA ATGCCGATGA AGAAACCCGT GTCTTATTGG CCCGCGAAAT TGCCGACATC
TATGCGCCGC TCGCGAACCG TTTGGGTATT GGTCAGTTAA AGTGGGAATT AGAAGATATT
TCCTTCCGTT ATCTGCATCC AGATACCTAC AAGGACATTG CGAAACAGCT AGATGGTAAG
CGGTTAGACC GCGAAGTCTA TATCGAAAAA TTTGTCGAGC AGTTGCAGCA GCGCCTCGAT
GAGGATCATA TCCGCGCTAA GGTCTATGGT CGTCCAAAAC ATATCTACAG CATTTGGCGC
AAAATGAAGG GCAAACACCT CAAGTTTGAT GAGTTGTTTG ACGTGCGCGC CGTGCGGATT
GTCACCGAAC GTTTGCAGGA TTGCTACGGC GCCTTAGGGG TCGTGCACAC TCTTTGGCAT
CATATTCCAC GCGAGTTTGA TGACTACGTG GCCAACCCTA AACCTAACGG TTATCAATCC
ATCCATACTG TTGTGGTGGG GCCAGAAGGT AAAACCGTTG AAATTCAAAT TCGTACCCAA
GATATGCATG AAGATGCAGA GCTGGGTGTT GCCGCGCACT GGAAATACAA GGAAGGTAAT
CACTCCGGCA AACAGAGCGG CTACGAAGAA AAAATCAATT GGCTGCGTAA AATTCTGCAA
TGGCAGGAAG ACGTGGTCGA AAGCGGCAAT TTGGTCGAAG AAGTCCGCAG CCAAGTGTTT
GAAGATAGAG TCTATGTCTT TACTCCAAGT GGTGAAGTCG TTGACTTGCC ACTGGGTTCA
ACCGTGCTCG ACTTTGCCTA CTATATTCAC TCGCAGGTTG GCCATAAGTG TATCGGCGCC
AAGGTCGATG GCCGGATTGT ACCGTTTACC TACCAGGTTG AAACGGGCGA GCGCATCGAG
ATTATCACCT CGAAGCACCC CAATCCTAAG CGCGATTGGC TCAATCCAAA CTTAGGCTAT
ATCCGCACAT CGCGGGCGCG TTCGAAAATT CAGCATTGGT TTAAGCAGCA AGACCGCGAT
AAAAACATTA TCGCCGGTAA AGAAATGCTC GAAGCCGAGC TGGCGCGAGT CAGCCTTAAA
ATCAAAGATG CTGCCATCGC CGTTGAGCGT TTTAATATGG CGAGTATGGA CGACTTGCTT
GCCGCCATCG GCGGCGGTGA TGTGCGTTTA CATCAGGTTG TTAACCATAT TCAAAGCAAG
TTGCGCCTCG ATGAGGCGAG CGAAGAAGAT GCGGTTGAAG AATTAGTTAA GAAGAGCCAA
CCTAAATCTG GCACCAATAG CCGAGGACAG GTGGAAGTGA ATGGCGTGGG TAATTTACTT
AGCCATATCG CCCGTTGCTG CCAACCCGTG CCTGGGGATG AGATTTTAGG CTTTATCACC
AAAGGGCGCG GTATTTCTGT GCATCGCTCC GACTGTGAGC AGGTGAAAGA GTTAATGCGC
GTTCACCCAG AACGCGGCGT CGATGTGGTT TGGGGCGAAA ACTATTCAGG TGGTTATCGC
ATGCGTCTGC GCGTCTTAGC CCATGATCGC AGCGGATTAT TGCGGGATCT CACCTCGGTA
CTAGCCGCCG AAAAGTCCAA TGTGCTTGCC ATGAGCTCCT CATCGGATAT TAAGAATCAG
ACGGCAGCCA TTGAGCTGGA ATTAGAGCTT TATAATCTTG ATGGTTTATC GCGGGTGTTA
TCTAAGCTCT CCCAAGTCGA TAGCGTGATA GAAGCGCGCA GATTGTAA
|
|---|
| Protein sequence | MVSVREAHFN DPDFHLEDWV ARYVSHVEEA QTLLTLIAQV EALPAKSPAA KRELLERARE
MIEILAPLNM DIETLQAAIL FVVFDAGLLN EEAIKEKFGE PLARLVASVV TMDAIGALKI
NPNSRSSEPQ IDNIRRMLLA MVEDVRAVVI KLAERVCLLR AVKNADEETR VLLAREIADI
YAPLANRLGI GQLKWELEDI SFRYLHPDTY KDIAKQLDGK RLDREVYIEK FVEQLQQRLD
EDHIRAKVYG RPKHIYSIWR KMKGKHLKFD ELFDVRAVRI VTERLQDCYG ALGVVHTLWH
HIPREFDDYV ANPKPNGYQS IHTVVVGPEG KTVEIQIRTQ DMHEDAELGV AAHWKYKEGN
HSGKQSGYEE KINWLRKILQ WQEDVVESGN LVEEVRSQVF EDRVYVFTPS GEVVDLPLGS
TVLDFAYYIH SQVGHKCIGA KVDGRIVPFT YQVETGERIE IITSKHPNPK RDWLNPNLGY
IRTSRARSKI QHWFKQQDRD KNIIAGKEML EAELARVSLK IKDAAIAVER FNMASMDDLL
AAIGGGDVRL HQVVNHIQSK LRLDEASEED AVEELVKKSQ PKSGTNSRGQ VEVNGVGNLL
SHIARCCQPV PGDEILGFIT KGRGISVHRS DCEQVKELMR VHPERGVDVV WGENYSGGYR
MRLRVLAHDR SGLLRDLTSV LAAEKSNVLA MSSSSDIKNQ TAAIELELEL YNLDGLSRVL
SKLSQVDSVI EARRL
|
|---|
| |