| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1110 |
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| Symbol | rumA |
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| ID | 4476445 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 1305325 |
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| End bp | 1306674 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639725653 |
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| Product | 23S rRNA 5-methyluridine methyltransferase |
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| Protein accession | YP_868751 |
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| Protein GI | 117919559 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0268238 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.546108 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACAAT TTTTTAAAGC AAAACCAAAT AGTTCCAAGC AATTGTCCGC GAAGCAATCC
TTTAGCGTGC ACCAGCTGGA TCATCTAGGG GCAGGTATAG CACAACATCA GGGAAAAGTC
GTATTTATCC CCGGCGCCTT GCCGAATGAA ACCGTGCAGG CGCAGCTGAC CGAACAAAAG
AAAAACTATG CCCGAGCCAA GCTGATTAAA GTTGAGACAC CGAGCGCTGA GCGAGTCACG
CCGCTATGCC CACATTACCA AAGCTGTGGT GGCTGCGATT TACAGCATAT GTCATTAGCA
GGGCAGCGCG AGCATAAGTC CGCGGCCTTG GTTGATATTA TGGCCAAATT TGCTGGTGCC
GAAGGCAACT CAGTGCCTGC ATTGACGGGC GAAGGTTGGC ACTATCGTCG CCGCGCCCGC
CTTGCGACCC TATTTGATAA AAATACCAAG CAGTTGAGCC TAGGGTTTCG CGCTTCGAGC
AGCAACCAAG TGGTGCCTAT TGATAGCTGT TTAGTCTTGG CGAAACCCTT AGCGGATTTA
ATTGCCCCAT TTGCTAAGTT GCTTAATCAA CTGGCGGCCA AGTCGAGCCT TGGGCATGTA
GAATTAATTG ATGCCGACAA CGGCCATTTT GCGGTAATTC GGATCACTAA ACCCTTAAAT
GATAAGGATA TGGCTAAGCT GGCGCAGTTT GCTGAGCAGC ATCAAATCCA TATTTGTCTG
CAAGACAACA ACGGCGAGTT CCATGGAGTG AATGGCACGC TGTTATTGCC CGTTTACCAG
TTACTCGATG ATAACGCCGA TGCAACGCCT GTGAGCCTCA CCTTTACCCC TGGTAACTTT
GTGCAAGTGA ATGCGCAAAT TAACAAGACC ATGGTGGCGC AGGCGTTAGA ATGGTTAGCA
CCACAGCCGG GTGAGCGAAT TCTCGATCTC TTCTGCGGTA TGGGGAACTT CAGTTTGCCT
TTAGCTAAAC TGGGCGCCGA AGTGATTGGG GTTGAAGGGG TGCCAGAAAT GGTCAGCCAA
GCCCGCGAAA ACGCGGCGGC AAATGGCTTA AGCAATTTAA CCTTTTACCA TGGCGACTTA
AGCGCCGATT TATCCTGTGA GCCTTGGATG GGGAAGATTG ATAAGTTGCT ACTCGATCCT
GCCCGCGCGG GTGCGTTCGA GAGTTTGCAA TGGCTTAAGA AGATGAAACC CCGCCAAGTG
GTTTATGTCT CTTGTAATCC GGCGAGCTTG GCCCGCGACA GTGCTGTGTT GCTCGAGCGT
GGTTACAAGT TACAAAAGTT AGGTTTAATC GATATGTTCC CGCAGACACA TCATATCGAA
GCCATGGCCT TGTTTGAGCT TGCAAAATAA
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| Protein sequence | MAQFFKAKPN SSKQLSAKQS FSVHQLDHLG AGIAQHQGKV VFIPGALPNE TVQAQLTEQK
KNYARAKLIK VETPSAERVT PLCPHYQSCG GCDLQHMSLA GQREHKSAAL VDIMAKFAGA
EGNSVPALTG EGWHYRRRAR LATLFDKNTK QLSLGFRASS SNQVVPIDSC LVLAKPLADL
IAPFAKLLNQ LAAKSSLGHV ELIDADNGHF AVIRITKPLN DKDMAKLAQF AEQHQIHICL
QDNNGEFHGV NGTLLLPVYQ LLDDNADATP VSLTFTPGNF VQVNAQINKT MVAQALEWLA
PQPGERILDL FCGMGNFSLP LAKLGAEVIG VEGVPEMVSQ ARENAAANGL SNLTFYHGDL
SADLSCEPWM GKIDKLLLDP ARAGAFESLQ WLKKMKPRQV VYVSCNPASL ARDSAVLLER
GYKLQKLGLI DMFPQTHHIE AMALFELAK
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