| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1096 |
|---|
| Symbol | |
|---|
| ID | 4476431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 1290407 |
|---|
| End bp | 1291552 |
|---|
| Gene Length | 1146 bp |
|---|
| Protein Length | 381 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 639725639 |
|---|
| Product | 5-amino-6-(5-phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase |
|---|
| Protein accession | YP_868737 |
|---|
| Protein GI | 117919545 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
|---|
| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0712601 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.635027 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTGGT CAGAACTCGA TAACCAGATG ATGAGCCGAG CCATACAACT GGCTCGCAAA
GGTTTTTATA CCACTCGCCC CAATCCCAGT GTGGGCTGCG TTATCGTAAA AGATAATCAG
ATTGTCGGTG AAGGTTATCA TCAAAAAGCC GGCGAGCCCC ACGCCGAGGT GCATGCACTG
CGCATGGCTG GCGAGCTTGC CCGTGGCGCG ACCGCCTATG TCACCTTAGA ACCTTGCAGC
CATTATGGCC GCACACCGCC GTGTGCCTTG GCGCTGATCA ATATTGGTGT AAAACGTGTA
GTGGTCGCGG TTGAAGATCC CAATCCGCAG GTCGGTGGTC GCGGTATTCA AATGCTGCGC
GATGCGGGCA TTGAAGTGGA TGTCGGCTTA CATCGCGACG AAGCTTATGC TTTAAATCTT
GGTTTTATGA AGCGCATGGA ATCGGGCTTA CCTTGGGTGA CGGTAAAGCT TGCCGCGAGT
CTCGATGGTA AAACCGCATT ATCCAACGGT GTCTCTAAGT GGATTACAGG CCCCGAAGCT
CGCCGCGATG TGCAGCGCTT ACGTTTGCGC GCCTGTGCAC TGGTCACTGG GATTGAAACC
GTACTGGCCG ATGCCCCTTC GCTTAATGTG CGCTACTCAG AGCTTGGCAG TCTTAACTTG
CAATTGAGTG AAGCGCAAAT TTTACAACCG CTGCGGGTGA TTTTAGATAG TCGTTGCCGC
ATGCCGATTA CGGCAGCCTT GCTTGCGATT GAATCGCCGA TTTTATTAGT CTCAACAGAG
CCTTACTCGC CAGCCTTTAT GGCGCAGTTG CCTGCCCATG TGACTTGTCT TCAATTACCG
GCGATTGATG GTCGAATCTC GCTGCCTGCA CTCTTAAGCT ATTTAGGCAA AAGCTGTAAT
CAGGTGCTTA TCGAAGCGGG CGCGACCTTA GCCGGCGCCT TTATCGGTGA CGGATTAGCC
GATGAGTTAG TGCTGTATCA AGCGATGAAA ATCCTTGGGG CACAAGGACG TAATCTACTC
GAATTACCCG ATTATCAAAT GATGGCCGAT ATTCCGACCC TCAAACTGGT CGATGAGCGT
AAAGTGGGCG CGGATATGCG TTTCACCTTG CGGCTCACGT CCAATCCATC TTTAGCGAAT
AAGTGA
|
|---|
| Protein sequence | MNWSELDNQM MSRAIQLARK GFYTTRPNPS VGCVIVKDNQ IVGEGYHQKA GEPHAEVHAL
RMAGELARGA TAYVTLEPCS HYGRTPPCAL ALINIGVKRV VVAVEDPNPQ VGGRGIQMLR
DAGIEVDVGL HRDEAYALNL GFMKRMESGL PWVTVKLAAS LDGKTALSNG VSKWITGPEA
RRDVQRLRLR ACALVTGIET VLADAPSLNV RYSELGSLNL QLSEAQILQP LRVILDSRCR
MPITAALLAI ESPILLVSTE PYSPAFMAQL PAHVTCLQLP AIDGRISLPA LLSYLGKSCN
QVLIEAGATL AGAFIGDGLA DELVLYQAMK ILGAQGRNLL ELPDYQMMAD IPTLKLVDER
KVGADMRFTL RLTSNPSLAN K
|
|---|
| |