| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1078 |
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| Symbol | |
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| ID | 4476413 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 1263695 |
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| End bp | 1266844 |
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| Gene Length | 3150 bp |
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| Protein Length | 1049 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 639725621 |
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| Product | hydrophobe/amphiphile efflux-1 (HAE1) family protein |
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| Protein accession | YP_868719 |
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| Protein GI | 117919527 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGTCGC AGTTTTTTAT TAAAAGACCG ATATTTGCAG CCGTTCTCTC GCTGCTGTTT
TTTATCACAG GGGCGATTGC CGTCTGGCAA TTACCCATTA CCGAATACCC TGAAGTGGTG
CCTCCGACGG TCGTGGTAAC CGCCAACTAC CCTGGCGCTA ACCCTAAAGT CATCGCTGAA
ACGGTTGCCT CGCCTTTAGA GCAGGAAATC AACGGTGTCG AAGACATGCT GTATATGTCA
TCGCAGGCAA CGTCCGATGG ACGCATGACC TTGACCATCA CCTTTGCCAT TGGCACCGAT
GTGGACAGGG CGCAAACCCA AGTACAGAGC CGGGTTGACC GTGCTATGCC ACGTTTGCCG
CAGGAGGTTC AACGCCTGGG GATTGTGACC GAAAAATCTT CGCCAGACTT AACCATGGTG
GTGCATTTAC TGTCGCCGGA TAACCGTTAT GACATGCTGT ATTTGTCTAA CTACGCGGCG
CTCAACGTAA AAGATGAGTT AGCGCGTATC AAAGGCGTGG GCGCGGTGCG TTTATTCGGT
GCGGGCGAAT ATAGTCTGCG GATCTGGCTT GACCCGAATA AAGTCTCGGC GCTTGGCATG
TCGCCAGCTG AAATTATTGC CGCGGTACGT GAGCAAAATC AGCAAGCGGC AGCGGGCAGT
TTAGGGGCGC AGCCTAGCGG TAATGCCGAC TTCCAACTCT TGATTAACGT TAAGGGGCGT
CTGACTGAAC TGTCAGAATT CGAAGACATC ATCATCAAGG TCGGTCAAAA CGGTGAGGTG
ATCCGTCTTA AGGATGTGGC CCGTGTCGAA CTCGGTGCAA CCAGCTATGC GCTGCGTTCA
TTGCTGGATA ACAAGGACGC GGTAGCGATC CCAGTGTTCC AAGCATCAGG CTCGAATGCG
ATTCAAATCT CCGACGATGT GCGCGCCGAA ATGGCAAGAC TGGCGAAGTC TTTCCCCGAA
GGGCTGCAAT ACGAGATTGT GTACGACCCG ACTGTGTTTG TGCGTGGCTC TATCCATGCG
GTAGTGAAAA CCCTGCTCGA AGCCGTGCTC TTAGTGGTAC TCGTGGTGGT GCTGTTTCTG
CAGACTTGGC GCGCCTCGAT TATTCCGCTT GTGGCCGTGC CTGTGTCTTT GGTGGGTACC
TTCGCCTTTA TGCACTTGAT GGGTTTCTCG CTGAATGCGC TGTCGCTGTT TGGTCTGGTG
CTGGCCATCG GGATTGTGGT CGACGATGCC ATCGTGGTGG TAGAAAACGT GGAGCGAAAT
ATCGCTTCGG GTTTAAGCCC TATTGCCGCA ACACAAAAAG CCATGAAGGA AGTGACTGGG
CCGATTGTGG CAACCACCTT AGTGTTGGCC GCGGTGTTTA TTCCGACCGC CTTTATGAGC
GGATTAACGG GGCAGTTTTA TAAGCAGTTT GCACTGACTA TTACGATTTC GACCTTTATT
TCGGCCATTA ACTCGCTCAC CTTGAGCCCA GCGTTATCGG CGTTGTTACT CAAGGGGCAT
GATGCGCCTA AGGATGCGCT CACTCGGTTA ATGGATAAGC TGTTTGGTGG CTGGTTATTT
ACACCCTTTA ACCGCTTATT CAACCGTGCC TCAGAAGGTT ATGGCTATTT AGTACGTAAG
GTGATCCGTT TTGGCGGCAT CATCGGACTA GTGTATCTGG GCATGGTTGC GCTTACGGGC
GTGCAATTTG TAAATACCCC AACGGGCTAT GTGCCAGGAC AGGATAAACA GTATTTAGTG
GCATTTGCCC AATTACCGGA TGCGGCCTCA CTCGAGCGTA CCGATGCGGT GATCAAGAAA
ATGTCCGACA TCGCCTTAAA TCACCCCGGT GTGGCGCACT CTATTGCCTT CCCCGGTCTG
AGTATTAACG GTTTTACCAA TAGTCCTAAC TCGGGCGTGG TGTTTGTTGC CCTAGATGAT
TTTGAGTTAC GTAAGAGTCC TGAACTGTCG GCGAATGCGA TTGCTGGCCA ATTAAATCAG
CAATTTGCTG GTATTCAGGA TGCGTTTATT GCCATCTTCC CGCCGCCACC TGTGCAAGGC
CTCGGCACTA TTGGAGGGTT CCGTCTGCAA ATTCAAGACA GAGCCAACCT TGGTTATGAG
GCCTTGTATC AGGTGACCCA ACAAGTGATG TACAAGGCGT GGGCCGATCC ACAATTAGCG
GGGATTTTCT CTAGCTATCA AGTGAACGTG CCACAACTTG AACTGGATAT CGATCGGACT
AAAGCGAAAC AGCAGGCAGT GTCGCTCGAT CAAATTTTCC AGACATTACA AACCTATATG
GGCTCGACCT ATGTCAACGA CTTCAATCGT TTCGGTCGAA CCTATCAGGT GAATATGCAG
GCCGACGAAG CATTCCGTCA AAGCCCGCAG CAAATTAGCC AGCTAAAAGT GCCGAATGTG
AATGGCGATA TGATCCCACT CGGCTCCTTT ATTAACGTGA GTCAGAGCGC GGGGCCCGAT
CGTGTGATGC ACTATAACGG TTTCACCACG GCTGAGATTA ACGGTGGCCC GGCACCCGGT
GTGAGTTCGG GGCAAGCGCA GGCTGCGATT GAGAAAATCC TCGCCGAGAC TTTGCCGATA
GGCATGACCT ACGAGTGGAC TGAGCTGACC TATCAGCAGA TCCTCGCCGG TAACACAGGC
TTGTTAGTGT TCCCTCTGGT GATCCTGCTG GTGTTTATGG TGCTGGCGGC GCAGTACGAG
AGTTTGAGTT TACCATTGGC GATTATCTTA ATTATCCCAA TGACCTTACT CTCAGCGCTC
AGTGGCGTGC TTATCTATGG CGGTGATAAT AATATTTTCA CCCAGATTGG TCTTATCGTC
CTCGTAGGCT TAGCGACCAA GAACGCGATT CTGATTGTCG AATTTGCCAA GGAAAAACAA
GACCATGGTA TGGAAGTCAT GGAGTCGATT CTCGAGGCGG CGCGCTTACG TTTACGCCCG
ATCTTGATGA CCTCTATTGC CTTTATCATG GGAGTGGTAC CCATGGTGTT TTCAACGGGC
GCGGGCGCCG AGATGCGTCA GGCCATGGGG GTTGCGGTAT TTGCCGGCAT GATAGGGGTG
ACACTGTTTG GATTAATCCT GACGCCACTA TTTTACTACG CCCTCGCTAA ACGCGGTCGC
CGTAAAGCGG AAGCGCTAAC GGCACAGTAA
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| Protein sequence | MLSQFFIKRP IFAAVLSLLF FITGAIAVWQ LPITEYPEVV PPTVVVTANY PGANPKVIAE
TVASPLEQEI NGVEDMLYMS SQATSDGRMT LTITFAIGTD VDRAQTQVQS RVDRAMPRLP
QEVQRLGIVT EKSSPDLTMV VHLLSPDNRY DMLYLSNYAA LNVKDELARI KGVGAVRLFG
AGEYSLRIWL DPNKVSALGM SPAEIIAAVR EQNQQAAAGS LGAQPSGNAD FQLLINVKGR
LTELSEFEDI IIKVGQNGEV IRLKDVARVE LGATSYALRS LLDNKDAVAI PVFQASGSNA
IQISDDVRAE MARLAKSFPE GLQYEIVYDP TVFVRGSIHA VVKTLLEAVL LVVLVVVLFL
QTWRASIIPL VAVPVSLVGT FAFMHLMGFS LNALSLFGLV LAIGIVVDDA IVVVENVERN
IASGLSPIAA TQKAMKEVTG PIVATTLVLA AVFIPTAFMS GLTGQFYKQF ALTITISTFI
SAINSLTLSP ALSALLLKGH DAPKDALTRL MDKLFGGWLF TPFNRLFNRA SEGYGYLVRK
VIRFGGIIGL VYLGMVALTG VQFVNTPTGY VPGQDKQYLV AFAQLPDAAS LERTDAVIKK
MSDIALNHPG VAHSIAFPGL SINGFTNSPN SGVVFVALDD FELRKSPELS ANAIAGQLNQ
QFAGIQDAFI AIFPPPPVQG LGTIGGFRLQ IQDRANLGYE ALYQVTQQVM YKAWADPQLA
GIFSSYQVNV PQLELDIDRT KAKQQAVSLD QIFQTLQTYM GSTYVNDFNR FGRTYQVNMQ
ADEAFRQSPQ QISQLKVPNV NGDMIPLGSF INVSQSAGPD RVMHYNGFTT AEINGGPAPG
VSSGQAQAAI EKILAETLPI GMTYEWTELT YQQILAGNTG LLVFPLVILL VFMVLAAQYE
SLSLPLAIIL IIPMTLLSAL SGVLIYGGDN NIFTQIGLIV LVGLATKNAI LIVEFAKEKQ
DHGMEVMESI LEAARLRLRP ILMTSIAFIM GVVPMVFSTG AGAEMRQAMG VAVFAGMIGV
TLFGLILTPL FYYALAKRGR RKAEALTAQ
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