Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_1044 |
Symbol | deoD |
ID | 4479389 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 1221592 |
End bp | 1222302 |
Gene Length | 711 bp |
Protein Length | 236 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 639725587 |
Product | purine nucleoside phosphorylase |
Protein accession | YP_868685 |
Protein GI | 117919493 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0813] Purine-nucleoside phosphorylase |
TIGRFAM ID | [TIGR00107] purine-nucleoside phosphorylase, family 1 (deoD) |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0000179251 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCAACAC CACACATTAA TGCTGTAGAG GGCGCATTCG CTGAGACAGT TCTGTTTCCA GGCGATCCAT TACGTGCAAA ATATATTGCT GAAACATTCT TAGAAAATGT TGAGCAAGTG ACTGACGTTC GAAACATGCT AGGTTTTACC GGTACTTACA AAGGTAAACG TATTTCTGTT ATGGGTTCAG GCATGGGTAT TCCTTCATGC TCAATCTATG CAACTGAATT AATTAAAGAC TACGGTGTTA AGAACCTGAT CCGCGTGGGT ACTTGTGGCG CGATCAGCAC TGACGTTAAA GTGCGCGATG TGATCATCGG CATGGGTGCT TGTACCGATT CTCAAGTTAA CCGTTTACGT TTCAAAGGCC AAGATTTCGC TGCTATCGCG AACTACGAGC TGATGAATGC CGTGATCGAA TCTGCCAAAG TGAAAGGCAC TAAGATCCGT GTTGGTAACG TTTTCTCTGC CGATCTGTTC TACACTCCTG ATCCACAAAT GTTTGACGTG ATGGAAAAAA TGGGCGTGTT AGGCGTAGAG ATGGAAGCCG CTGGTTTATA TGGTGTTGCC CATGAATTCG GTGCTCGTGC ACTGTGTGTG GTAACTGTAT CTGACCATAT CCGTACTGGC GAGAAAACCA CTTCTGATGA GCGTCAAACC ACGTTCAACG ATATGATCGT GATGACATTA GACGCAGCAA TTACGCTGTA A
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Protein sequence | MATPHINAVE GAFAETVLFP GDPLRAKYIA ETFLENVEQV TDVRNMLGFT GTYKGKRISV MGSGMGIPSC SIYATELIKD YGVKNLIRVG TCGAISTDVK VRDVIIGMGA CTDSQVNRLR FKGQDFAAIA NYELMNAVIE SAKVKGTKIR VGNVFSADLF YTPDPQMFDV MEKMGVLGVE MEAAGLYGVA HEFGARALCV VTVSDHIRTG EKTTSDERQT TFNDMIVMTL DAAITL
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