| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1042 |
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| Symbol | deoA |
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| ID | 4479387 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 1218945 |
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| End bp | 1220276 |
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| Gene Length | 1332 bp |
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| Protein Length | 443 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639725585 |
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| Product | thymidine phosphorylase |
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| Protein accession | YP_868683 |
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| Protein GI | 117919491 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02643] thymidine phosphorylase
[TIGR02644] pyrimidine-nucleoside phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.429173 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 3 |
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| Fosmid unclonability p-value | 0.000000248089 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | ATGTTTCTAG CTCAGGAAAT TATACGTAAG AAACGCAATG GGTTAGCCTT AAGTACAGAA
GAGATCCAGT TCTTCGTTAA GGGCATAACC ACTAATGCAG TGTCGGAAGG TCAGATCGCC
GCACTAGGCA TGGCTGTGTA TTTTAATGAC ATGAATATGG ATGAAAGAAT CGCTTTGACC
ACGGCAATGC GCGATTCTGG CACTGTACTC AACTGGCAAT CACTTGGTCT GAATGGCCCT
GTCATCGATA AACACAGTAC AGGTGGTGTC GGTGATGTGA TTAGTCTCAT GCTCGGCCCC
ATGGCTGCGG CTTGCGGTGG TTATGTGCCG ATGATTTCGG GTCGCGGACT CGGACACACA
GGCGGTACGC TCGATAAGTT CGACGCTATT CCCGGTTATC AAACCGAACC TTCGAGTGAA
TTGTTCCGCA AAGTAGTTAA AGACGTTGGT GTGGCGATTA TCGGCCAAAC TGGCGATCTG
GTTCCCGCCG ATAAACGTTT TTATTCCATC CGTGACAACA CTGCGACCGT CGAATCCATC
TCCCTCATCA CCGCCTCAAT TCTCTCTAAG AAATTAGCTT GTAGTCTCGA TGCATTGGCG
ATGGACGTCA AAGTCGGTAG CGGCGCATTT ATGCCAACTT ACGAAGCCTC TGAAGAGCTT
GCTCGCAGCA TTGCGGCGGT AGCCAATGGC GCAGGTACTA AAACGACGGC CTTACTCACC
GACATGAACC AAGTGTTAGC CTCATGTGCG GGTAATGCGG TTGAAGTGAA AGAAGCCATC
GATTTTTTAA CCGGTGCTTA CCGTAATCCT CGCCTCTACG CAGTGACTAT GGGGCTATGT
GCCGAGATGT TACTCCTGGG TGGTCTGGCG AGCGATGAAG CCGATGCCCG TGCCAAGTTG
AACCGCGTGC TAGACAACGG CCGTGCTGCC GAGATCTTTG GCAAGATGGT TTCAGGCCTC
GGTGGCCCCG TCGATTTTGT CGAAAACTAC AGTAAGTACT TACCGCAATC ACAAATTATT
CGCCCTGTCT TTGCGGATAC CCAAGGTTAT GCTTACAGCA TGGATACCCG CGAACTCGGT
TTAGCCGTGG TTACCTTAGG TGGTGGTCGT CGCAAACCTG GTGATGCACT CGACTACAGT
GTTGGTTTGA CGCAAGTCTG TGCCCTTGGC GATAAAATTG ATGCTTCTAC GCCGATTGCT
GTGATCCACG CGCAATCTGA AGAAGCCTTT GCGCAGGCAG AAGAAGCGGT GAAAAAAGCG
ATTCATATCG ATGAAGTCGC TCCAGAAAAA ACACCTGAGA TCTATGCTTA TATTCGAGCT
TCGGATCTTT AA
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| Protein sequence | MFLAQEIIRK KRNGLALSTE EIQFFVKGIT TNAVSEGQIA ALGMAVYFND MNMDERIALT
TAMRDSGTVL NWQSLGLNGP VIDKHSTGGV GDVISLMLGP MAAACGGYVP MISGRGLGHT
GGTLDKFDAI PGYQTEPSSE LFRKVVKDVG VAIIGQTGDL VPADKRFYSI RDNTATVESI
SLITASILSK KLACSLDALA MDVKVGSGAF MPTYEASEEL ARSIAAVANG AGTKTTALLT
DMNQVLASCA GNAVEVKEAI DFLTGAYRNP RLYAVTMGLC AEMLLLGGLA SDEADARAKL
NRVLDNGRAA EIFGKMVSGL GGPVDFVENY SKYLPQSQII RPVFADTQGY AYSMDTRELG
LAVVTLGGGR RKPGDALDYS VGLTQVCALG DKIDASTPIA VIHAQSEEAF AQAEEAVKKA
IHIDEVAPEK TPEIYAYIRA SDL
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