Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_1034 |
Symbol | |
ID | 4479379 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 1206822 |
End bp | 1208846 |
Gene Length | 2025 bp |
Protein Length | 674 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 639725577 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_868675 |
Protein GI | 117919483 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.20154 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000000435621 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | TTGGAAACAA ACAAATCTCG TCGTTTTTAC AGCGCTTTTT TCGCTATCGC CATCTTCATT GTTGAAATCG CCCTCGTCGT CTCCACCAAG CAGCAACTCA CTACCACTCA ACAGGAATTA CTCGATTCTG TAGAACAACC CGCCGCCAAC GCCGTCTGGG CTTTAGATGA TAATTTGGCA AGGCAAACCC TAGAGGGGGC GATTAAAGTA GAGCATGTGG GCTCTGCGGT GATTGAACTC GATGACGGCT CGATGTTTGT TTCCGTGAGC AATAATAAGA AAAACAACTC ACAAACCTTT ATCAGCCTCA GCAATAAACT CTTTGATGAC TTAAAAGAAA TCTCACGGCC CTTGTATCGG CCCTTTTACT TTGAAGGCAC TCAAAAACAG CAGCTTATCG GCACGCTAAC CATTTTTTAC GATACGCAGG AACTGACCAA CACCCTCTTT AGCCAGTTAC GCTTCAGCTT TTTTGCCACC TTAGCCCGCG CGCTGTTACT CACCTTAGTG CTGTCTGTCG TATTCCACCG CTTCTTGACA CAGCCAATAG CCAGGATCAG CGAGGCCATT GATAAGATTT CCCCCGATTC GCCCGATGAA AACCTGCTGC CCATGTCCAA CGCCCATAAG GATGATGAAT TAGGTCTAGT GACATCGAAG TTTAACCAGA TCCTTATTCA ATTCAGTCAG ACCCAATCCA AACTGCGTAA AATGGCCACC CGAGACCCAT TAACAGGCCT TCCTAATCGA ACCCTATTAC TCGAAACCAT TGCCGTGACT ATCCAGCGCT CACGGGTTCA TAAAAGCAGT TTTGCTTTGA TGTTTATCGA CTTAGACCGT TTCAAAAATA TCAATGACTC CCTCGGACAC GCCCTTGGCG ATCAATTCCT CGCCCGCATC GCCCGTATTT TGGAACGCGT GGTGGGCGAT AAAGGGTCAG TATCACGCCT AGGCGGCGAT GAATTCGTGA TTCTAGCCGA CTCAGTTCAC TCCCCCGACC AAGCTGCCGA CTTTGTCGAT AAGCTGTTAG TGCAGCTGAA TGTGCCGATT CAGCTGAATG AACATGCGAT TCACCCGGCG GCATCGATTG GGATTTCCAT CTATCCAGAA GATGGCAACA GCGCCGAAGA TCTTATCCGC CATGCCGATA TCGCCATGTA CAGCGCCAAG GCCGCAGGAT CGAATCAATG GGCCTTCTTC AAACAACAGA TGACCGAGCG CGCGGCTGTG CGACTCCGTA CCGAAGCATC GCTACATGAT GCCTTGAAAA ACAATGAATT TTTGCTCTAC TTTCAGCCCA AATTAGATTT ACAAACCGGT AAGATCACCG CTTGTGAAGC CCTGATCCGT TGGCAAAAGG ATGGCCGTTT AATCAGCCCC ATCTCCTTTA TTCCGGTGGC GGAAGAAACC GGCATTATTA TTCCGATTGG ACGTTGGGTT ATCGAGCAAA GCTGCCGCGT GCTACGCGAC TGGCAGAAGA AATATAACTA TGCGATACCG ATTGCTATTA ATGTCGCGTC ACAACAATTT GCCGATGCCA GCTTAGTGTC GGACATTAAG CAAATGGCGC TGCGTTACCA AATTCAACCG GAATTGCTCG AAATTGAAAT CACCGAAACA TCGTTGATGA ATGACATTGA GCTTGCGATC AACAAGTTAG AACAGCTCAA GTCGGCCGGA TTTGGTATCG CCGTCGATGA CTTTGGTACC GGCTACTCTT CCCTGTCTTA CCTGCGGCAT TTGCCGATCA CGACCATGAA AATCGACCGC TGCTTCGTAT CCGACTTACC AGGAGACAGT GCGATTGCCT CGACCATTTT GATGTTAGGT AAACAGTTAA ATCTGACTAT CGTCGCCGAA GGCATCGAAA ACGAGCAGCA ACTCGATTGG CTCAAGCGTA ACCAATGTCA AATAGGTCAA GGCTTCTACT TTAGCCAGCC GTTACCACAG GCAGAGTTTG AGGCGCTGTA TATTGCCAAC CAAACCGCAA CCATTAGCAA TATTGATGGA TTTCGTGGCG CCTAA
|
Protein sequence | METNKSRRFY SAFFAIAIFI VEIALVVSTK QQLTTTQQEL LDSVEQPAAN AVWALDDNLA RQTLEGAIKV EHVGSAVIEL DDGSMFVSVS NNKKNNSQTF ISLSNKLFDD LKEISRPLYR PFYFEGTQKQ QLIGTLTIFY DTQELTNTLF SQLRFSFFAT LARALLLTLV LSVVFHRFLT QPIARISEAI DKISPDSPDE NLLPMSNAHK DDELGLVTSK FNQILIQFSQ TQSKLRKMAT RDPLTGLPNR TLLLETIAVT IQRSRVHKSS FALMFIDLDR FKNINDSLGH ALGDQFLARI ARILERVVGD KGSVSRLGGD EFVILADSVH SPDQAADFVD KLLVQLNVPI QLNEHAIHPA ASIGISIYPE DGNSAEDLIR HADIAMYSAK AAGSNQWAFF KQQMTERAAV RLRTEASLHD ALKNNEFLLY FQPKLDLQTG KITACEALIR WQKDGRLISP ISFIPVAEET GIIIPIGRWV IEQSCRVLRD WQKKYNYAIP IAINVASQQF ADASLVSDIK QMALRYQIQP ELLEIEITET SLMNDIELAI NKLEQLKSAG FGIAVDDFGT GYSSLSYLRH LPITTMKIDR CFVSDLPGDS AIASTILMLG KQLNLTIVAE GIENEQQLDW LKRNQCQIGQ GFYFSQPLPQ AEFEALYIAN QTATISNIDG FRGA
|
| |