Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_1032 |
Symbol | truB |
ID | 4479377 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 1205386 |
End bp | 1206339 |
Gene Length | 954 bp |
Protein Length | 317 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 639725575 |
Product | tRNA pseudouridine synthase B |
Protein accession | YP_868673 |
Protein GI | 117919481 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.358719 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0000301922 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGCGAGAC GTTCGAAGGG CCGCTTTATC GACGGTATTG TGTTGTTGGA CAAAGCCACT GGCATGAGTT CCAACTTTGC ATTACAACGG GTAAAGCGCT TTTTTAATGC CAATAAAGCG GGGCACACGG GGGCGCTCGA TCCCTTGGCA ACGGGTATGC TACCTGTGTG TTTAGGCGAA GCGACTAAGT TTTCGCAGCA TTTGCTGGAT TCGGATAAGC GTTATCTGGT TACCGCAAAA CTGGGACAAC GCACAGATAC TAGCGACTCC GACGGTGAAG TGGTGCAGAC TCGCCCGCTC GAATTCACTG AGGCGCAGTT AATGTCCGCC TTAGAGCATT TTCGTGGCGA TACCCAGCAA GTACCCTCCA TGTATTCGGC GCTGAAATAC CAAGGCCAGC CTTTGTATAA GTATGCCCGC GAGGGGATTG AAGTGCCGCG CGAGGCGCGT CCAATTACGG TCTTTGAACT GAACTTCATC GGTCTAGAAG GCGATGAGCT GACCTTAGAC ATTCATTGTT CAAAGGGCAC TTATATTCGC ACTATCATCG ATGATTTAGG TGAGATGCTT GGTTGTGGCG CCCATGTGAT TATGCTGCGT CGTACTCAAG TCGCGCATTA TCCCTACGAC AAAATGGTCA CCTTGGAGCA ACTCGAAGCC TTAGTCGCTA AGGCGCAGGA AGAGCAGCTT GACCCTAGCA GTTTGCTTGA CTCGTTGCTG CTACCTATGG ATACCGCTGT TGCTGACTTT CCTGAGGTCA ATGTGCCAGA TGCAAGCGCA GCTTACTTAA TGCAAGGTCA GGCGGTACGT GTCTCTGGAC TCGTTGCAGA TACATTGGTG CGCATTACGT TGGGCACTGA GCGTCGTTTC GTTGGAATTG GCGAGATGAA CCAAGATGGC TTACTGGCAC CAAAGCGCTT AGTTGTGCTC CACGACCAAG CTAAAGCATC TTAA
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Protein sequence | MARRSKGRFI DGIVLLDKAT GMSSNFALQR VKRFFNANKA GHTGALDPLA TGMLPVCLGE ATKFSQHLLD SDKRYLVTAK LGQRTDTSDS DGEVVQTRPL EFTEAQLMSA LEHFRGDTQQ VPSMYSALKY QGQPLYKYAR EGIEVPREAR PITVFELNFI GLEGDELTLD IHCSKGTYIR TIIDDLGEML GCGAHVIMLR RTQVAHYPYD KMVTLEQLEA LVAKAQEEQL DPSSLLDSLL LPMDTAVADF PEVNVPDASA AYLMQGQAVR VSGLVADTLV RITLGTERRF VGIGEMNQDG LLAPKRLVVL HDQAKAS
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