| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_1029 |
|---|
| Symbol | nusA |
|---|
| ID | 4479374 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 1200689 |
|---|
| End bp | 1202188 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639725572 |
|---|
| Product | transcription elongation factor NusA |
|---|
| Protein accession | YP_868670 |
|---|
| Protein GI | 117919478 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0195] Transcription elongation factor |
|---|
| TIGRFAM ID | [TIGR01953] transcription termination factor NusA
[TIGR01954] transcription termination factor NusA, C-terminal duplication |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0307152 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0000658902 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAG AGATTCTGCT AGTCGCTGAG GCGGTTTCAA ATGAAAAAGC CGTTCCACGC
GAGAAAATTT TTGAAGCGCT AGAAACTGCG CTGGCAACTG CAACCAAGAA AAAATACGAA
GGCGATATCG ACGTTCGTGT TTCTATCGAC CGTAAAACCG GCGCCTATGA AACGTTCCGC
CGCTGGATGG TGATCGATGA TAACGGTGTT GCGTTAGAAA ACCCATACCG CGAAATCACC
TTGGAAGCTG CGCGTTACGA AAACCCAGAA ATCCAACCTG GCGATTACAT CGAAGATCAG
ATCGAATCTG TTGCCTTCGA CCGTATTACG ACGCAAACCG CTAAGCAAGT GATCGTACAA
AAAGTACGTG AAGCCGAGCG TGCGCAAGTC GTTGAACAGT TCCAAGATAA AGAAGGCGAG
CTGATCACTG GTGTTGTGAA AAAAGCGACC CGTGAAAGTG TTGTTGTTGA CTTAGGTAAC
AACGCTGACG GCGTATTGTT CCGTGAAGAT TTAATTTCAC GCGAATCTTT CCGTCCTGGT
GACCGTGTCC GTGCACTGCT GTATTCAGTA CGTCCAGAGG CACGTGGCGC GCAGTTATTC
TTAACTCGCA CTAAGCCAGA TATGCTGATT GAGCTGTTCC GTGTTGAAGT ACCGGAAATC
GCCGATGAGC TGATCGAAGT CATGGGCGCT GCGCGCGACC CAGGTGCACG CGCTAAGATC
GCCGTGAAGT CAAACGACCG TCGTATCGAC CCAATCGGTG CTTGCGTAGG TATGCGTGGT
GCACGTGTAC AAGCAGTATC GAATGAACTC GGTGGCGAGC GTGTGGATAT CGTGTTGTGG
GATGATAATC CAGCACAATA TGTGATCAAC GCAATGGCGC CTGCCGATGT GGCTTCTATC
ATCGTTGATG AAGACAACCA CTCAATGGAT ATCGCCGTTG AAGCGGAAAG TCTGGCACAA
GCGATTGGCC GTAACGGTCA AAACGTACGT TTAGCGACTC AGCTGACTGG TTGGGAACTG
AACGTAATGA CAGTGGAAGA CATGAACAAG AAGCACCAAG CCGAGAGCGC TAAGGTGAAG
AGCTTATTCA TTAACGCACT GGATGTAGAT GAAGATTTTG CTCAAGTACT GGCTGACGAA
GGTTTTACTT CTCTCGAAGA AGTGGCTTAC GTGCCTGTAT CTGAATTATT AGCAATTGAT
GGCTTCGATG AAGATATCGT TGAAGCATTA CGTGAGCGTG CAAAAGCGGC GATCTCAACT
CGAGCTCTCG CCACTGAAGA AGCACTAGAT GGTGTGGAGC CAAGTGAAGA GTTATTAGCA
CTTGAAGGTG TTGAAAGACA CTTAGCCTAT GTTTTAGCAA GCAAAGGTAT CGTGACTCTA
GAAGACTTGG CTGAACAAGG CATTGATGAT TTGATCGAAA TTGAAGAATT GACAGAAGAA
AAAGCAGGTG CGCTGATCAT GGCTGCCCGC AACATCTGTT GGTTTGGCGA AGAAGCATAA
|
|---|
| Protein sequence | MNKEILLVAE AVSNEKAVPR EKIFEALETA LATATKKKYE GDIDVRVSID RKTGAYETFR
RWMVIDDNGV ALENPYREIT LEAARYENPE IQPGDYIEDQ IESVAFDRIT TQTAKQVIVQ
KVREAERAQV VEQFQDKEGE LITGVVKKAT RESVVVDLGN NADGVLFRED LISRESFRPG
DRVRALLYSV RPEARGAQLF LTRTKPDMLI ELFRVEVPEI ADELIEVMGA ARDPGARAKI
AVKSNDRRID PIGACVGMRG ARVQAVSNEL GGERVDIVLW DDNPAQYVIN AMAPADVASI
IVDEDNHSMD IAVEAESLAQ AIGRNGQNVR LATQLTGWEL NVMTVEDMNK KHQAESAKVK
SLFINALDVD EDFAQVLADE GFTSLEEVAY VPVSELLAID GFDEDIVEAL RERAKAAIST
RALATEEALD GVEPSEELLA LEGVERHLAY VLASKGIVTL EDLAEQGIDD LIEIEELTEE
KAGALIMAAR NICWFGEEA
|
|---|
| |