Gene Shewana3_0983 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0983 
Symbol 
ID4477511 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp1153788 
End bp1155959 
Gene Length2172 bp 
Protein Length723 aa 
Translation table11 
GC content49% 
IMG OID639725517 
ProductTonB-dependent siderophore receptor 
Protein accessionYP_868624 
Protein GI117919432 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID[TIGR01783] TonB-dependent siderophore receptor 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.698273 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.622732 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGTTTA TTTTTGGAGT AAAAATGGCT GTTTATATTA GCCACAAGCG CTCGGCATTC 
GTGCTGGGCG TGGCGTTATT GGCGTTGGAT GCGAGTGTTC CCCTATTGGC CGCCGAGGCT
ATGCCAACTG ATACCGTTGG ACTTAATGGC GATATCGAGC GTTTAAGTAT TCATTATCGT
CAGGCATACC GCGGCAATGT GCCGGCGACT GAGTTGCCCC AGGCAATTAC TGTGCTGGAT
GAGCAACTGA TTAAAGATAC TGGGCTGACG CGTTTTCAAG ACTTATTGGA TTATTCCGCC
AGTGTCGCGC GGCAAAATAA CGGTGGTGGG TTATGGGATA GTTTTTCGTT ACGGGGCTTT
CCTGGGAATG AAAACATGCC ATCGGGCTAT TTAATCAATG GTTTTAATGG TGGCCGAGGT
TTTAGCGGCC ACAGAGACCT ATCGAACGTG GCCTATGTGG AAATTCTCAA AGGCCCGGGC
TCGGCGCTTT ATGGACGCTC GGAGCCCGGC GGCACTGTAA ATATTGTGAC TAAAAAGCCG
CAGTACGAGG CGCAGGGCTA TTTAAAAGCC TCCGCGGGGA GTTTTGATCA ATATCGGTTA
GAAGGGGATT TTACTTCGGG GCTGACTGAT AGCTTAGCTT TTAGGATCAA TGGTGCTTGG
CAGGAACATG ACAGTTTTCG CGATTACGTG TTTAGCGATA AAAAAATCGT CACACCATCG
CTGCGTTGGC AACTGTCGGA TAGGTCATCG CTCCTGTATG AGGTTGAATA TCTTAAACAA
GAACAGTTAT TTGACCGTGG TGTAGTAGTG CTCAATAACG ATTTTAATAC CGTGTCCCGT
TCGCGTTACT TGGGCGAGCC CAATGATGGG CCAACAAAAG TGGATGCGAC TGGGCATCAG
CTTACCTATG AGTATGAATT GAATGAGGAT TGGTCGCTGA CCGCGGGTTA TAACTATCGC
GATTCGAGTT TAAATGGCTA CTCTTCGGAT GCTGAATTAG CAAAGGGGCG TCAATCCTTA
TATGACGATG GCCGTACGCT GACGCGGCAG CATCGTTATC GAGATTATGC TTCTGAAGAC
CATTCAGTGC GGGCCGAACT CAGCGGTCAG TTTGATACTG GTAGCATAAG GCACAATCTG
CTGCTCGGAA CGGATGCCTA TCATTATCGA CTGAAAACGG GACTCTACCG TTATCGAGGC
CAGAAGGGCG CCTATGCTAT CGATATTTTT ACCCCCCAAT ATGGCGCTGC TCAGCCTGAG
GTGAGTCTGT TGTATGAAAA CCGAGAGACT CAAGATGCTT GGGGTGCCTA TTTACAGGAC
CAATTGGAGT TAACCGAGCG TTGGAAACTG CATTTAGGGT TAAGGTTTGA CCGTTATTCC
CAAGAAATCG CAGAGCAGGT CAACGCGAGT CTGTCGGATC AAAGCGATCA CAGGGTCAGC
CCGAAAGTCG GATTAGTGTA CCAATGGTCT GAGGCGCTAA GTGTTTACGG TTCCTATTCG
GAAGGATTTT TACCGCTTTC AGGCACTGAT TATGCGGGTA ATCCCTTCGA GCCAGAGGAG
AGCAAATCCG TCGAGTTGGG GGTTAAGTTC AACAGCACTT GGTTTGAGCT ACCCGTCAAT
GGCAGTTTGG CTTGGTTTGA TGCGCAAAAG AGCAATATCT TGACCTCAGA TCCCGTCAAT
GTTGGCTTTT CGGCGACCCT TGGTGAAGCC AAGAGCACGG GGATTGAATT GGATATTACG
GCCGAGTTGA CCGAGAACTT ACAAGCGTCC TTGTCCTATG CCTACCTGAA TACCCGGACG
GCGAACGACA GTCTGAATCT AGATTGGGGC GTGTTAATTC CGGCGGGCAG TCCGTTGGTC
AATGTGCCAA AACACACGGG CAGTGTCATT CTCAAACAGG ACTTAAATGA TCTTTCTATC
GACGGTCATT TAGGGTTGAG TTGGCGTTAT GTGGACTCAC GCTTGGGCGA TTCGGCCGAT
CCAAGTTTTC AATTACCGAG TTATCAGTTG CTTGGAATGT TCTTCACTAC TCGGCTTGGC
GAAAATCTAA GTCTCGCGCT CAATGTCGAT AACCTGCTGG ATGAGCACTA TATCGCCAGC
AGTTACTCGG CGCTGTGGGC CGTACCGGGT GAGCCACGTA ACGTTAAAGT GAGTGTTAGC
TATGAATTCT AA
 
Protein sequence
MLFIFGVKMA VYISHKRSAF VLGVALLALD ASVPLLAAEA MPTDTVGLNG DIERLSIHYR 
QAYRGNVPAT ELPQAITVLD EQLIKDTGLT RFQDLLDYSA SVARQNNGGG LWDSFSLRGF
PGNENMPSGY LINGFNGGRG FSGHRDLSNV AYVEILKGPG SALYGRSEPG GTVNIVTKKP
QYEAQGYLKA SAGSFDQYRL EGDFTSGLTD SLAFRINGAW QEHDSFRDYV FSDKKIVTPS
LRWQLSDRSS LLYEVEYLKQ EQLFDRGVVV LNNDFNTVSR SRYLGEPNDG PTKVDATGHQ
LTYEYELNED WSLTAGYNYR DSSLNGYSSD AELAKGRQSL YDDGRTLTRQ HRYRDYASED
HSVRAELSGQ FDTGSIRHNL LLGTDAYHYR LKTGLYRYRG QKGAYAIDIF TPQYGAAQPE
VSLLYENRET QDAWGAYLQD QLELTERWKL HLGLRFDRYS QEIAEQVNAS LSDQSDHRVS
PKVGLVYQWS EALSVYGSYS EGFLPLSGTD YAGNPFEPEE SKSVELGVKF NSTWFELPVN
GSLAWFDAQK SNILTSDPVN VGFSATLGEA KSTGIELDIT AELTENLQAS LSYAYLNTRT
ANDSLNLDWG VLIPAGSPLV NVPKHTGSVI LKQDLNDLSI DGHLGLSWRY VDSRLGDSAD
PSFQLPSYQL LGMFFTTRLG ENLSLALNVD NLLDEHYIAS SYSALWAVPG EPRNVKVSVS
YEF