| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0969 |
|---|
| Symbol | |
|---|
| ID | 4478895 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 1138711 |
|---|
| End bp | 1139478 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639725502 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_868610 |
|---|
| Protein GI | 117919418 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTT TCACAGGCCT ACTGCTATTA CTCACCGTTG GCGCCTTTCC CTTGCGCGTA
GCAGCCACAC TGAATATTTA TACCGAAGAA TGGGCCCCCA TTAGTTTTTC CGTCGACGGC
AAACCCGATG GTTTAGCGGT ACAAGTGGTG CAAGAAATCC AAAAGCGTGT GAATAATCAG
GATCCCATCA AGGTGGTGCC CTGGGCACGC GGCTGGAAAA TCATGACGGA ACAAGCTAAT
ACAGTGCTGT TTACTATGAC TCGTACCCCC GAGCGAGAAC AGCTGTTTAG TATGATAGGC
CCAGTCGCCG TTGGCACGAC AAACTTCTAC GCACTCAAAA ACAGTCAACT CAACATTAGC
TCGATTGATG ATGCTAAACA GGCTAAAGCC GTAGGAGTGT ATCGCTCCTC CGTTGAGGAA
CAATTATTAA TGGAGCATGG TTTGACGAAT CTCGCTCCCT CATCGACACC ACTACTGAGC
GCTAAGCAAC TGATGAAGCG CCGAATCGAT CTCTGGTGCA ATGCCAATCT TACCGCCCCA
AGTATTCTCG CCGAAGCGGG TGCGAGTATT GATGATGTCA AATCCCTCTA CACTATCAGT
GCGAATCATC TATACATTGC CTTTTCGAAG GGAACGCCAA GTGAAGAAAT CGATAAATGG
AAAGAGGCAC TTATCAGCAT TAAGGCCGAT GGCACCTTTG CACAAATCTA TCACCACTGG
CTGCCCAATG ATGCGCCGCC AATGGAAACC GAGCGCATTG GGCAATAA
|
|---|
| Protein sequence | MKFFTGLLLL LTVGAFPLRV AATLNIYTEE WAPISFSVDG KPDGLAVQVV QEIQKRVNNQ
DPIKVVPWAR GWKIMTEQAN TVLFTMTRTP EREQLFSMIG PVAVGTTNFY ALKNSQLNIS
SIDDAKQAKA VGVYRSSVEE QLLMEHGLTN LAPSSTPLLS AKQLMKRRID LWCNANLTAP
SILAEAGASI DDVKSLYTIS ANHLYIAFSK GTPSEEIDKW KEALISIKAD GTFAQIYHHW
LPNDAPPMET ERIGQ
|
|---|
| |