| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0931 |
|---|
| Symbol | |
|---|
| ID | 4478857 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 1088696 |
|---|
| End bp | 1091842 |
|---|
| Gene Length | 3147 bp |
|---|
| Protein Length | 1048 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639725464 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_868572 |
|---|
| Protein GI | 117919380 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG5373] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGTTAA AGGATGACGT TGACCAACTC AAGGCAGAAT TGGCGCAGTT AAAACTGCAG
CACCTGTCGC AGCAATCTTC ACTCAGCCGC CAACTGGCAG AATTCTCGGC CAAGCTCGAC
AGCATCAGTC TTCAGCTTGA GCAACAAGAC AACGCCACTC TCACCACCGC ATCCACCTGC
ACGGACGATA TCACAACGCC ATTCGGCACG ACGATTGAGC CAAGGGATGG GCGCGCCTCA
CTGCAAACTG AAGAAATGGC TCCCCATATC CAACCACAAG CGCCCGAGGC AAATCCTTGG
CAAGACGATC CTTGGCAGCG CCACGCAAAG GCTCCCTCAA AAGCCGTGCA TTCACCAGTG
GATTCGCAGC AGGATGATTT GCAGCAAGAT AAGGCCTTTT CTCAGCAAGC CGGACTTGAA
GTGGGTGTGC AGGCCACAAG TCAGTTAGGG ACCATCTTAT CCCAAAGCGT TGCCGCCATT
ATGGCGCCAT TTGCAGCCAT CACTGAACAG GTCAAAGGCT TTTATCAACA TTATCAAGCC
AAGGGTCTAG GCCCAGTGTT TTTGATGACG GTCGCGGGCA TCATCACCCT CACCCTAGGT
TTTGGCTACC TACTGCAATA TTCCATCAAC CATTGGTTTT CCGAACTCGG TAAAGCCCTA
CTAGGTTTTG GCTGCGCCAA TGCGATTATT GCGGGCGGGA TTTTTATCCG CCAAAAAAGG
GCGGGCATGG CCGACTTTGG ATCTGGGGTT GTCGGATTAG GCCTTATCCT AAACTATCTC
TGCGCCTATT TTATTGGCCC CTACTTTGAG ATTATCCCTA ACAGTGCCAG CTTTATCCTG
CTGCTATTGA TTACCTTAGC GGGCTATGGC CTGTCGATGC GACTCGATGC CAAGGTCATT
GCCGTGATAG CTTTAGTCGG CGGCTCAATG GCGCCTATGA TGTTGTTATC CCAAAGCTAT
GCGCCGCTAC TGTATATTCC CTATCTGCTA CTGATAGGTG CGGGCGCCCT CGCCCAAAGC
CGTAAATTAC ACTGGCCATT ACTGCTGGAA ATCACCGCCT TCCTGCATAT CGCCTGCATC
GAAGCCTTCA GTTATTTTAT CGATTTACCG CTCACTCAAT GGGGCGGCGC AGCAGTGCTC
GCCCTAGTGA GCATTAACGC ACTGTTTTAT CTCTATGGTC TATTTGGGTT TATGGTGAAT
CCTTCAACGA CCTCACTTAG CCATAGAGCC TTAGTTCTGC CGATAGCCCT ACTGGCCTTT
GTTATCTTCG AACTCACCCA ATTTACGCCA TTTGCAGGGG AGATATTTAT TGCCAACGCA
CTCATCTGCG CAGGCTTATA CGTTAAGCTC AAGTCTCGAC TCGCCCCGTC CCAGCGCAGT
CTCTTGTTAG TCTTTGGCGG CAGTTTTGCC GCCTTTGCTG CCCTTTATCT ATTAAGCCAT
GATTTCCTGG GATTAGTGCT CATTCTCGAA GCATTGCTCC TGCTATGGAT TGGCCTTAAG
GAGAAACTGA TTTCGGTGCG CGCCGAAGCC TACGTGTTAT TGCTGACAGG GCTGGTTCTC
AATTTATATG CGGTGCTGAC AGGTTTTTCC TTACTCGGAC TTGGCGAGCA AACGATGATG
GCGGCGCTTG GGTTCCCGCT GCTCGCGCTA GCCTTAAGCG CGGCGGCCCT GCTCTTTGTT
ATCCGCCAAG TTGGCAATGA TGAGTTGCCA CTGTCGCGGC TCGAGCGGCA ATTGAGTTAT
TTATTCAAAG AGTTCCTCAG CGGCTTTTAT GTGGCGACCC TTTTGCTGGC GGCTTACCTT
ATCAGCAGCG ATTATTACCT CGCCATCATC CCGCTCGTGA GTCTGTTGAT GTTGTATTTA
AGTGGTAAAG ACAAGTTGAT GGTCAGCGAA TTTGCCGCTT GGCTCTTGCT GCTGCCGCTC
TTGTTTTCTG TGGTCGAAGG AGTGACCCTC ACTGGCAGCC TGAGCTTTAG TGCGCAGCCA
CTGATGGCCA AACTGGCACG CATTGAATTA TTCGCCGCCC TGTTGCTGGC CCACTATTGG
TATCGTAAGC ATTACCCAAG CTCGCTGTTC GCCCAGGCCG CCAAGCAGAT ACAACTCGGC
TGTTATCTGC TGCTGCCGCT AATCTTATTG CCTAAGGTGA TGCGCAGTTA TTGGGAGTTT
ACCGCGGTTG CACTCTGGCT CAGCAGCTTG TTCAGCCTCG CCCTTGCCTA TGTTATCAAG
CATAAAGCCC TTGAGATTGA AACCAAGATT TTGACTTGGC TAGCGATCCT CACCACCGCC
AGCTTGTGCC TATTTGAAGT TTGGCAAGGA CTTATCGCAC TGCTCATTGG CGCCCTAGCC
ATGGGCTTTG TACTGCTGCG TTATCGCAAG CTTGCCAAGC CTTGTGCATC ACTGCTAACC
CTGCAATGGC AACTTAGCCC TTATTATTTC GCGCTGGTGC TGGCCGTATT GGTCTATGGA
TTTAACCGCG TCGATGTAGT GGCATGGTCG ATGACGGCAT TAGCACTGAG CGGCTACTTT
GCCCTCTTGC TCCAAAGACG CACCAAACAT GGCTCAGTGC AAACGGGATT GATGGCGCAC
TTAGCCATCG AAATCCAAGC CGCGGTGCGC TCAAGCTACA GCTTGGCCTA CGGGCTTTGT
CTAGGGCTAG TGCTGCTGCC GATAATGCTG CATTTTGAGT TGTCGCTAAG ACTCGATCTG
GATAACGTGT TATTGATCCT CTGTGAATTG ATGGCATTAG CACTGCTCGC GCTACTTATC
TTACGCCGCG GCGTCGCTAT TCGTTTGCAT CAGCGTTTCT TACCGCTGCA ATGGCTCAAA
TGGGGCTGGC ATGGATTGCT CGCGCTGAGT TATCTCACCT GGAGTTATGC GTTCGATAAT
ATGATTGCCG CGCCACTCAG CGCCATTTTG CTCGTCGTCC ATGGCAGCGT GTTAATGTTT
ATCAGCCTAA AACCCCAGCA TGGGGATATG ATCCGCCTCG CCGCTGGACT CTTTACCTTA
GCCACACTCA AAGTGTTATT GCTGGATATG GCGTCCTTCG AGCTAGTGCA AAAGGTTATC
GCCTTTATGT TGATTGGGGT GATCTTACTG ACCGTATCTT ACTTCTATCA AAAGGCGCGT
AATCGCCTAC AAGAAGCAAA CCAATAA
|
|---|
| Protein sequence | MPLKDDVDQL KAELAQLKLQ HLSQQSSLSR QLAEFSAKLD SISLQLEQQD NATLTTASTC
TDDITTPFGT TIEPRDGRAS LQTEEMAPHI QPQAPEANPW QDDPWQRHAK APSKAVHSPV
DSQQDDLQQD KAFSQQAGLE VGVQATSQLG TILSQSVAAI MAPFAAITEQ VKGFYQHYQA
KGLGPVFLMT VAGIITLTLG FGYLLQYSIN HWFSELGKAL LGFGCANAII AGGIFIRQKR
AGMADFGSGV VGLGLILNYL CAYFIGPYFE IIPNSASFIL LLLITLAGYG LSMRLDAKVI
AVIALVGGSM APMMLLSQSY APLLYIPYLL LIGAGALAQS RKLHWPLLLE ITAFLHIACI
EAFSYFIDLP LTQWGGAAVL ALVSINALFY LYGLFGFMVN PSTTSLSHRA LVLPIALLAF
VIFELTQFTP FAGEIFIANA LICAGLYVKL KSRLAPSQRS LLLVFGGSFA AFAALYLLSH
DFLGLVLILE ALLLLWIGLK EKLISVRAEA YVLLLTGLVL NLYAVLTGFS LLGLGEQTMM
AALGFPLLAL ALSAAALLFV IRQVGNDELP LSRLERQLSY LFKEFLSGFY VATLLLAAYL
ISSDYYLAII PLVSLLMLYL SGKDKLMVSE FAAWLLLLPL LFSVVEGVTL TGSLSFSAQP
LMAKLARIEL FAALLLAHYW YRKHYPSSLF AQAAKQIQLG CYLLLPLILL PKVMRSYWEF
TAVALWLSSL FSLALAYVIK HKALEIETKI LTWLAILTTA SLCLFEVWQG LIALLIGALA
MGFVLLRYRK LAKPCASLLT LQWQLSPYYF ALVLAVLVYG FNRVDVVAWS MTALALSGYF
ALLLQRRTKH GSVQTGLMAH LAIEIQAAVR SSYSLAYGLC LGLVLLPIML HFELSLRLDL
DNVLLILCEL MALALLALLI LRRGVAIRLH QRFLPLQWLK WGWHGLLALS YLTWSYAFDN
MIAAPLSAIL LVVHGSVLMF ISLKPQHGDM IRLAAGLFTL ATLKVLLLDM ASFELVQKVI
AFMLIGVILL TVSYFYQKAR NRLQEANQ
|
|---|
| |