Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_0882 |
Symbol | |
ID | 4477093 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 1028163 |
End bp | 1028897 |
Gene Length | 735 bp |
Protein Length | 244 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 639725418 |
Product | extracellular solute-binding protein |
Protein accession | YP_868526 |
Protein GI | 117919334 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00121366 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.225798 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAT CCATGTTATT AGGCGGCCTA GCCCTCACTG CCACCTTGTT GTTAGCTGGA TGTGGGAAAA GCAACGATAT TTTAGTGGTT GGCACCAATG CGGCCTTCCC GCCCTTTGAA TACGTTGGCG GACAAAGTGG CGACGAGATC AAAGGCTTCG ACATTGAGCT TGCCAAACGA ATCGCTAAAG ATGCCGGCAA GACGCTCAAA GTCGAGAATA TGAAATTCGA TTCACTGATC GTGGCGCTAA ACTCAGGCAA GATTGATTTT ATCGCCTCGG GCATGACCAT CACCCCGGAG CGTCAGGCCA GCGTTAACTT TTCGGAGCCC TACTATGAGG CGACTCAAGT GCTGCTCGTG AATAAAGATA ACGACACCAT TCATACCCTT GATGACATTA AAGACAAACA CTTTGCAGTG CAGCTCGGCT CAACCGCCGA TATGATGTCT AAAAAATACA CCCAAAATGT CACCGCCTTT AACACCGGCT TCGAAGCCAT CATGGAACTG AAGAATGGCA AAGTCGACTT AGTGCTATTC GATAGCGAGC CTGCGGCGAA CTATCTGGCG AAAAACCCCG ATCTCAAACT GATCAAGCTG GACTTCCCCC CAGAGTTTTA TGGCTTTGCA GTGTCAAAGC AGCAGCCTGA ACTTCTCAAT AGCATTAATA ACACGCTGAA AAACTTGAAA GAAAGCGGCC AATATCAGAC GCTCGTTTCA GCCCATATCA AGTGA
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Protein sequence | MKKSMLLGGL ALTATLLLAG CGKSNDILVV GTNAAFPPFE YVGGQSGDEI KGFDIELAKR IAKDAGKTLK VENMKFDSLI VALNSGKIDF IASGMTITPE RQASVNFSEP YYEATQVLLV NKDNDTIHTL DDIKDKHFAV QLGSTADMMS KKYTQNVTAF NTGFEAIMEL KNGKVDLVLF DSEPAANYLA KNPDLKLIKL DFPPEFYGFA VSKQQPELLN SINNTLKNLK ESGQYQTLVS AHIK
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