Gene Shewana3_0880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0880 
Symbol 
ID4477091 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp1026759 
End bp1027484 
Gene Length726 bp 
Protein Length241 aa 
Translation table11 
GC content49% 
IMG OID639725416 
ProductABC transporter related 
Protein accessionYP_868524 
Protein GI117919332 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1126] ABC-type polar amino acid transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.152128 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.31511 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATTAACA TAACCAACCT ACACAAAAGT TACGGCGATA ATGCTGTTCT TAAGGGCATC 
AACGAACATA TTCGCCAAGG CGAAGTGGTG AGTGTTATCG GCCCTAGCGG CAGCGGTAAA
AGCACCTTTT TACGTTGCAT CAACCTGTTA GAAAAACCCA CCCAAGGGGA TATTGAAATC
GAAGGGCAAT CCATTACCGC CAAGGATGCC TGTGTCGACA AATTACGGCA AAAAGTGGGC
ATGGTGTTCC AAAACTTCAA CCTGTTCCCC CATAAAACCG TATTGCAAAA CATTACCTTA
GCGCCAGTGA GCCTAAAGTT AATGACCCAA GCCGAAGCCG ATAACAAGGC GTTGGCGCTG
CTTACTCAAG TGGGGTTGCA GGATAAAGCC AATGCCTATC CTTCGAGTCT CTCGGGTGGA
CAAAAACAAA GGGTTGCCAT TGCCCGCGCG CTGGCGATGG AGCCGGATCT GATGCTATTC
GATGAGCCCA CCTCGGCACT CGACCCCGAA ATGGTCGGCG ATGTACTGGA TGTGATGAAG
GACTTAGCGC AAAAAGGCAT GACCATGGTG ATTGTCACTC ATGAAATGGG CTTTGCACGC
GATGTTTCCG ACAGAGTCAT CTTTATGGAT GGCGGCTATG TGGTGGAGTC CAATATCCCC
GAGGAATTAT TCACCCGCCC CAAAGAAGCC AGAACCCAAA GCTTTTTAAG TAAGGTGCTG
AGGTAA
 
Protein sequence
MINITNLHKS YGDNAVLKGI NEHIRQGEVV SVIGPSGSGK STFLRCINLL EKPTQGDIEI 
EGQSITAKDA CVDKLRQKVG MVFQNFNLFP HKTVLQNITL APVSLKLMTQ AEADNKALAL
LTQVGLQDKA NAYPSSLSGG QKQRVAIARA LAMEPDLMLF DEPTSALDPE MVGDVLDVMK
DLAQKGMTMV IVTHEMGFAR DVSDRVIFMD GGYVVESNIP EELFTRPKEA RTQSFLSKVL
R