| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0877 |
|---|
| Symbol | |
|---|
| ID | 4477088 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 1022525 |
|---|
| End bp | 1023535 |
|---|
| Gene Length | 1011 bp |
|---|
| Protein Length | 336 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 639725413 |
|---|
| Product | sugar-binding protein, putative |
|---|
| Protein accession | YP_868521 |
|---|
| Protein GI | 117919329 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.222726 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGAGAT TATTGATGCT GCTGATTGCT TTTAGCCTAT TACCGCTGTC ATGTGGCTAC
GGAAAGGAGC TTAAGTTTGC AGTCGTGCCT AAATTCTATA GTGTTTTTTT TGATCAAAGC
AAAACGGGTT GTGTTGACGC CGCCGCACAA ATTAAAGGGG TTGAATGCAT CTATCGAGGA
CCCGAATTAA GTAGTGTGAG ATTGCAAGAT CAAGTGATAA ATCAGCTGAT TGATGAAGGT
GTGGATGGAA TTGCCGTCGC GGTTACGCAA TCTAAATATC TTGCCGAAAA TAGCCTAAAG
AGAGCAAAGG AAGTCGGTAT TCCTGTTGTT ACCTATGACT CAGACTTTGA TGCTTCTATC
GATGAAGACC CTAAGAGTTT ACGTTTGGCT TATATCGGCA CCGACAATTT TGCACTAGGT
CAGTCGTTAG GGGAGGAGCT TAAAAAGTTA CGACCCAATG GCGGAACCCT CATCATGCAA
TCGGGGCGAC CCGATTCTCC GAATCTGAAT CTAAGACTAA TGGGCGTTCG CACTGCGTTA
TCAGGCAAAA CTTACAATAC CCCTCCTGGT GAATTGCTCA ATAACGATTT GGGCTGGACT
GAAGTGCGGG AGCCTTTGTT TAATTTTGAC CAACTTAGTC AAGCGGTTAA GCAAATGGAG
TCCGTGATGA AAGGTAAGCC TGTTAAAGCC GACTCCTTCG TTGCCGTAGG CGGTTGGGCG
CAAAATGATG TAGCTCTCTA CCGTGAAATG ATGGCTCCCT ATCAAGATAA AATCGATAAC
AAGGACATCG TCATTATTAT TACCGACACC TCTCCAGAGC AATTAACTAT GTTAAAAGAC
CGCCTTGCCC ATATCAACAT TGGTCAAAGT CCCTATGAAA TGGGCAGGCA GGCCATTTTG
ACCTTATATA AAATTGTCAC GAAACAAAAA TACGATGAAA TTATCTACAC ACCTGTGACC
TTTTGTACTC AGCAGAACTA TGAGACCTGC GAGAAACCTA CGGGAATGTA A
|
|---|
| Protein sequence | MARLLMLLIA FSLLPLSCGY GKELKFAVVP KFYSVFFDQS KTGCVDAAAQ IKGVECIYRG
PELSSVRLQD QVINQLIDEG VDGIAVAVTQ SKYLAENSLK RAKEVGIPVV TYDSDFDASI
DEDPKSLRLA YIGTDNFALG QSLGEELKKL RPNGGTLIMQ SGRPDSPNLN LRLMGVRTAL
SGKTYNTPPG ELLNNDLGWT EVREPLFNFD QLSQAVKQME SVMKGKPVKA DSFVAVGGWA
QNDVALYREM MAPYQDKIDN KDIVIIITDT SPEQLTMLKD RLAHINIGQS PYEMGRQAIL
TLYKIVTKQK YDEIIYTPVT FCTQQNYETC EKPTGM
|
|---|
| |