| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0835 |
|---|
| Symbol | |
|---|
| ID | 4477046 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 968003 |
|---|
| End bp | 968986 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 639725371 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_868479 |
|---|
| Protein GI | 117919287 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTATGG GTAAGTCTTC CCAAGGCCAA CTTAAACTTC GGCACTTAAG CTTTCGTTTG
CTCGAGGTGT ATGTACAGGT TGTCAGGCTT GGCAATATCT CGGCCGCTGC GCGCGCCTTG
CATCTCACCC AGCCGACAGT TTCGCTACAA CTGAAGAAAT TGGCCGATAT TTTGGGCGAG
CCTCTATTGA TAAGCGCAGA GGGGCGAATG CAGCCAACCT TAGTCGGGCA AGAGCTCTAT
CGGGTTGCCT GCGATACCTT GAGTCGTTTC GAAGACTTCG ATGCCTTTAT CCAACAGGCA
AGGGGCGGCA GTGTGGGGCA TATCAATATT GGTCTAGTGA CCACGGCAAA ATACGTGATG
CCTCGGATTC TAGGGGCCTT CTATCGCCAA TTTCCGCAGG TTAAAGTCAC CTTAAATATT
GGCAACCGTG CACATATTTT GGGGCGATTC GAGCGCCAAG AAGATGATTT ATATCTCTTT
AGTCATCCAC CCAGTGGTGA GCATGTGTTA TCGGCGCGGA TCATTAAAAA TCCGCTGCAA
CTAATAGCCC CTAAGGATCA TTGGGCGGTT GAGCGCCAAC ACCTCAACTT TAATGAGTTG
AAACAAGAGC GCTTTATCAT GCGCGAGCCG GGCTCTGCCA CACGGCTGAT GTTTGAATCT
TGGTGTAGTG CCCAAGGGAT TGCCTTGAGC GACACTATGC AAATTGAGAG CAACGAGGCG
ATTCGTTTAA GCGTGGCGTC GGGCTTAGGC TTATCGGTGA TCTCGGCCCA CACGTTGCAG
GAAGGGCGTG AAAAACCCGC AATATTGTCG GTGAAAGGAT TTCCACTGGA GAGTAACTGG
TATCTGGTGG GGCGCAGGGA CAGGCGCTTA CCCTATGCCG CTATGCAGTT GGTGTCGTTT
ATGGCGAGCC AACTTGCAGA CTGTATTGAA CCTGAATGGG TTGCTGCGGA TATTCAGCAG
TTAAGCCAGC GATTTAGTGG ATGA
|
|---|
| Protein sequence | MSMGKSSQGQ LKLRHLSFRL LEVYVQVVRL GNISAAARAL HLTQPTVSLQ LKKLADILGE
PLLISAEGRM QPTLVGQELY RVACDTLSRF EDFDAFIQQA RGGSVGHINI GLVTTAKYVM
PRILGAFYRQ FPQVKVTLNI GNRAHILGRF ERQEDDLYLF SHPPSGEHVL SARIIKNPLQ
LIAPKDHWAV ERQHLNFNEL KQERFIMREP GSATRLMFES WCSAQGIALS DTMQIESNEA
IRLSVASGLG LSVISAHTLQ EGREKPAILS VKGFPLESNW YLVGRRDRRL PYAAMQLVSF
MASQLADCIE PEWVAADIQQ LSQRFSG
|
|---|
| |