| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0763 |
|---|
| Symbol | |
|---|
| ID | 4476974 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 884555 |
|---|
| End bp | 885088 |
|---|
| Gene Length | 534 bp |
|---|
| Protein Length | 177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639725299 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_868407 |
|---|
| Protein GI | 117919215 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.061264 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGGCAG GGAGACTCCC ACTCAACAAT GCGATGTCAG AACTTGACCT CATCACCTTG
GCTAGCCAAG GGAATAGAGC CGCATTCAAG CAGCTGTATT TACACCATCA TCCAAGGGTT
TATGCCCTGT CACTGCGATT ATCAGGCCAA GCCTCGCAGG CGGAAGAGAT CACTCAGGAG
TGCTTTATTC TGGTCTGGCA GAAATTGCCG CAGTTTAGGG GAGAGAGCCA GTTTTCTACT
TGGTTACACA GTATTTGTGT GAATCAAGCA CTGAGCTTTA TCCGTAAGCA AAAGTCGTTT
TGGGCGCGTT TTATCCCGAT GGAGAGCGAC GATGAACATT CAAGCGCAGA TGAGCATTAT
CAAGGGTTAG ACAAATTGAT CCTCAGACTG CCAGAGCGGG CGCGTATCGT GTTTGTGCTC
TGCGCCATTG AAGGCTACCA ACATGAAGAA ATTGCACAAT TACTTGGTAT TGCCGTGGGA
ACCAGTAAGA CCCAGTACCA CAGAGCCAAG CAATTACTAC AGGAGATGCT GTAA
|
|---|
| Protein sequence | MTAGRLPLNN AMSELDLITL ASQGNRAAFK QLYLHHHPRV YALSLRLSGQ ASQAEEITQE
CFILVWQKLP QFRGESQFST WLHSICVNQA LSFIRKQKSF WARFIPMESD DEHSSADEHY
QGLDKLILRL PERARIVFVL CAIEGYQHEE IAQLLGIAVG TSKTQYHRAK QLLQEML
|
|---|
| |