| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0747 |
|---|
| Symbol | |
|---|
| ID | 4476958 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 866449 |
|---|
| End bp | 868389 |
|---|
| Gene Length | 1941 bp |
|---|
| Protein Length | 646 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 639725283 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_868391 |
|---|
| Protein GI | 117919199 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0221541 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTAGCT ATCTGTTTCA GTGCGAACAG GAAACCTTTC CCTTGCCACA CACTCAGCGT
AATTTATCTC TGTTTCTGAT GCTGCTGTTA GTGCCGCTAA GCCTTGCCGT TGCAGAAGAA
AAGCCACAGA TCGATCAAAT ATTCAAATTA TTTGAAAGTG GTGAGGTTAT GGCTCGCGAG
TCGGTAGAGC AAAATATCGC GCTACTGGAT AAACTGATTG CCAGTGATGA TGTAGAACAC
ATCGAAAAGT TAAAAATGCT CAAATGCTGG AATCAACCAG CCGAGACAGA AGCTGAAATC
CTTCTCGCCC GAGACAAAGC ACAAGAAGCG CTGAATAGCA TTCCCACCAC AGCCTCAGTC
CATTTTGCCA CCGATCTAAC CCTATGCCAC TCCTGGTTTC TACAATTAAG TGGAGATATT
AATGGCGCTA TGGAAGGGTA TTCTCGCAGC ATTAAAACTG CATACGAACA TGAAGATATC
AAGCTTATCG CCGATGCCCG CAGCTTACGT GGCGCACTCT ACTCCTATAT TGGTGACTTT
TCCGCCGCCT TAGACGATTT AGTCACCGCA CAAGGGCTGT ACGAATCCTT AAATTTAACT
GGCTGGGCAA ACATCAATCT AACCGACATT GCCACCAGCT TTAGGCGCTA TGGTGATCCC
GAGAGTGCAA TCAAGTATTA CAACAAACTC AAAGAGTTAT ATCTAAAGAA AGGGAACGAG
GAGCAAGTCG CTAATGTCAC CTCCGATATA GGGATTGCCT TAGATGAAAT GGGCGAGCAC
GAACAGGCCA TTGAAAACTT TCGTTTTAGC TATCAGTACT TTAAAAAGCA TCGACTCAAC
AATGCCGCCG CGGTCAACGC CACTAACATC GCCTACAGCT TGATCCAACT AAATCGTTTA
GATGAGGCCG AAAAATATCT AAAAGAAGCC GAGTTAGAGA TCACGGCGAA CGAACCCGCA
GCCTACAGCT TTATGAAGTT GTTTATGGGC AAAATTCGTT ATCAACAAGG TCGCTATCAA
GAGGCGTTAA GCGAACTCGC CGACGCTGAA AATGCGTTTC GCGCCATGCA GAATGATCGC
GGCTTAGTTC AGCTGTTGCA ACTCAAGAGC GAAGTCTATG CGGCGATGAA TGATTTGCCG
TCGGCCTATC AAACTTTACA GCAGTTTGTC GCCTTGACTC GAAAGGTGGA AGACAATTCG
TTTGCGCACC AAACCACTGA GTTAAAAGTA AAATTTGATA CCAGTTGGAT TGAGTCAGAA
AACAAACGCT TACTCGATAA CCAAAAATTA AAGGAACAAG AGTTAGCACT GCTCGAGAAA
AATAAGTCGC TGCAACTTAT CATCCTACTA CTCACGGGCT GCATTTTGGC CATAGTGTCA
CTCTTTGCCT ACAAACAAGT GCACCGCAAT CGTCACCTAC AGACCATAGC CCTAACCGAC
TATCTGACCC AATTGCCCAA TCGTCGATAC ATCTATGCCA AGGCGGAACA ATATTTTCAA
CAGGCGTTAA AGCAACAAAC CCCGTTATCG GTAATCATCT TCGATGCGGA TCATTTTAAA
AAGATTAACG ATAATTTCGG CCATGAAATT GGCGACCAAG CACTATTAAC CATAGCCCAA
GCCAGCCAGG CATTAACTGC TGACCGCAAC TTGATTGGCC GTATCGGTGG CGAAGAGTTT
TTAATTTTAT TACCCAATAC CAACGCCGAA CGCGTGTGGG AACTCGCCCA TGAGCTGCAA
ACCTTAATCA CCCGTTATGG CGCCATTAAT TTACCCGTAG AGTTAAAGCT AACTGTAAGT
GCAGGGGTGG CAACTTTAAA TACCGAATTA GGCAAACAAG ATGACAGCTT TGCGCGTTTG
CTTAAGCGTG CGGACAACGC CCTTTACGAC GCTAAAAATG CTGGTAAAAA CTGCGTCAAA
GTCGCAAAAG CCACGAGCTA A
|
|---|
| Protein sequence | MISYLFQCEQ ETFPLPHTQR NLSLFLMLLL VPLSLAVAEE KPQIDQIFKL FESGEVMARE
SVEQNIALLD KLIASDDVEH IEKLKMLKCW NQPAETEAEI LLARDKAQEA LNSIPTTASV
HFATDLTLCH SWFLQLSGDI NGAMEGYSRS IKTAYEHEDI KLIADARSLR GALYSYIGDF
SAALDDLVTA QGLYESLNLT GWANINLTDI ATSFRRYGDP ESAIKYYNKL KELYLKKGNE
EQVANVTSDI GIALDEMGEH EQAIENFRFS YQYFKKHRLN NAAAVNATNI AYSLIQLNRL
DEAEKYLKEA ELEITANEPA AYSFMKLFMG KIRYQQGRYQ EALSELADAE NAFRAMQNDR
GLVQLLQLKS EVYAAMNDLP SAYQTLQQFV ALTRKVEDNS FAHQTTELKV KFDTSWIESE
NKRLLDNQKL KEQELALLEK NKSLQLIILL LTGCILAIVS LFAYKQVHRN RHLQTIALTD
YLTQLPNRRY IYAKAEQYFQ QALKQQTPLS VIIFDADHFK KINDNFGHEI GDQALLTIAQ
ASQALTADRN LIGRIGGEEF LILLPNTNAE RVWELAHELQ TLITRYGAIN LPVELKLTVS
AGVATLNTEL GKQDDSFARL LKRADNALYD AKNAGKNCVK VAKATS
|
|---|
| |