| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0672 |
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| Symbol | |
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| ID | 4476882 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 791964 |
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| End bp | 793439 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639725207 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_868316 |
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| Protein GI | 117919124 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.151414 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.0700122 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCGT CACTCCAGCT CAAACTGGGT CAACAGTTAA CCATGACGCC ACAACTTCAA
CAGGCCATTC GTCTGTTGCA ACTGTCGTCA TTGGAACTGC AGCAAGAGAT CCAGCAAGCC
TTAGACTCTA ATCCTCTTCT TGAGCTGGAA GAGGAGCAAT TCGACGCGCC TACCGAACGT
AAGCAAGATA TCGCCGATAC CGACTTTAGC GAAACGACAG CTCAGCCACA GGAACAAGAT
AATTCCACCG TGGACATTGC CGAGTCGTTG ACCAAAGAAT CCCTGCCCGA AGAACTACCC
ATGGACACCA CTTGGGATGA AGTCTTTACC GCATCGCCAA ACTCAGGTTC TGGCGCCAGC
CGTGAAGATG ACATGCCCTT CCAAGGGGAA ACCAGTGAAG GCCTGTACGA ACATTTAGAA
TGGCAGAAAA ACCTCACGCC CTTCTCTGAA ACCGATTTAG CTATTGCCAC CGCGATTATT
GATGCCATCG ACGATCAAGG TTATCTGACT CAAAGTACTG AAGATATCCT CGAGGCCATG
GGCAATCCTG AGATCGAGCT GGATGAAGTC GAAGCCGTAC TCAAGCGCAT TCAACACTTC
GATCCCGTCG GTGTCGCCGC AAGGGATTTA AGCGAATGTC TGCTTATCCA ACTCTCTCAC
TTTGCGCTGG ATACCCCACA CCTCGAAAAC GCCCGCATGT TGATCAAAGA CCATTTAGAT
CTGATCGCCG CCCGCGACTT TAGATTGTTG ATGCGTAAGA CCAAACTCAA AGAGGACGAG
TTAAGGGAAA GCATAGCGCT GATCCAAACC TTAAATCCTC GCCCCGGTTT GCTCATCACT
CCTGTTGATG AAGAATATGT CATCCCCGAT GTATCAGTGT CGAAGAAAAA TGGTCGCTGG
GTGGTCGAGT TAAATCCAGA CTGCATGCCA AAAATCAATG TTAATCAGCA ATATGCAGCC
ATGGCGCGCA GTACCAAAAG CCAAGCCGAT AGCCAATTTA TCCGCGGGCA CCTGCAAGAA
GCCAAGTGGT TTATCAAAAG CCTTGAAAGC CGTAACGAAA CACTGCTCAA GGTGGCAAAC
TGCATAGTGC AATATCAACA GGGCTTCTTC GAATACGGTG AAGAAGCCAT GAAACCTATG
GTCCTAAACG ATATCGCCGA GGCGGTAGAG ATGCATGAGT CCACCATTTC ACGGGTGACC
ACACAAAAAT ACATGCATAC CCCAAAGGGA CTTTTTGAAC TAAAATATTT CTTCTCAAGC
CACGTCGGGA CTGATGATGG CGGTGAGTGC TCATCCACGG CAATCAGAGC CTTCATTAAG
AAACTGGTTG CAGCGGAAAA CCAGAAAAAA CCATTAAGCG ACAGCAAGAT GGCGCAACTT
CTGGCAGAAC AGGGAATTAA CGTTGCGCGC AGAACCATTG CGAAGTACCG AGAGGCGATG
CTTATTCCCC CTTCCAATCA GCGTAAAAGT TTATAG
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| Protein sequence | MKASLQLKLG QQLTMTPQLQ QAIRLLQLSS LELQQEIQQA LDSNPLLELE EEQFDAPTER
KQDIADTDFS ETTAQPQEQD NSTVDIAESL TKESLPEELP MDTTWDEVFT ASPNSGSGAS
REDDMPFQGE TSEGLYEHLE WQKNLTPFSE TDLAIATAII DAIDDQGYLT QSTEDILEAM
GNPEIELDEV EAVLKRIQHF DPVGVAARDL SECLLIQLSH FALDTPHLEN ARMLIKDHLD
LIAARDFRLL MRKTKLKEDE LRESIALIQT LNPRPGLLIT PVDEEYVIPD VSVSKKNGRW
VVELNPDCMP KINVNQQYAA MARSTKSQAD SQFIRGHLQE AKWFIKSLES RNETLLKVAN
CIVQYQQGFF EYGEEAMKPM VLNDIAEAVE MHESTISRVT TQKYMHTPKG LFELKYFFSS
HVGTDDGGEC SSTAIRAFIK KLVAAENQKK PLSDSKMAQL LAEQGINVAR RTIAKYREAM
LIPPSNQRKS L
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