| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0659 |
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| Symbol | |
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| ID | 4476869 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 779893 |
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| End bp | 781833 |
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| Gene Length | 1941 bp |
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| Protein Length | 646 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 639725194 |
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| Product | diguanylate cyclase/phosphodiesterase with GAF sensor |
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| Protein accession | YP_868303 |
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| Protein GI | 117919111 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.172911 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCTACA AGTTTGCCCT CCAACAATCT CAAAAAGAAC GTTTATTCGC GGATATCGCT
ATTGATACAG GCAAGATTAC CGTGCCGCCT GAGATGCTAG AGAATTGGCA ACAAACCTTA
GATCTGCTCT CCGAGATAGT GGATACGCCG GCCGCGCTTA TCATGCGTGT TCATCCTACC
GAGATTGAAG TATTTGCCTC GAGCCATAGT CAGGGAAATC CCTACAAGCC CCACGATAAA
GAGCATTTAG GCCATGGCCT GTATTGCGAA ACCGTGATGA AAGAATGTCG AGAGCTCCAC
ATCCCCAACG CTTTGAAGGA TGCCGATTGG GATAAAAATC CCGACATAAA ACTGGGGATG
ATAGCCTACT GCGGCCTGCC CTTGCATTGG CCCGATAACA GCACCTTCGG CACCATTTGT
ATGCTCGACA GTAAGGAGCG TAACTACAGC CAGCAGTTCC GCAGTTTATT GGCACGATTT
CAAAATGCTA TCGAAACCAA TCTGATCACT CTGTTCCAAC AGGCTAAGTT GCAGCTCCAT
AACCAACAAC TCGAACAGAA AGTGCAGCAA CGCACCCATG AACTGGCAGA ACTCAGCGCC
AAGTTAATCC GTGAAATTGA AACCCGTACG ACGACCGAAA GCTCACTTGA GTATCATAAA
AGCTACGATC CGCTGACAGG GTTACCCAAC CGGCTCAATC TCATCAACAC CCTAGCGAAT
ATGCTGGAAG AGATTAATCG TAAAGAAAAA ATATCAGTGT TTTACCTAGG GCTGCGTAAC
TTTAAATCCA TTAACGACAG CTACGGTTAT CTTATCGGCG ATAAGATACT CACCATCTTG
AGCCAACGCT TACAACATTG CACAGACGGT CATACCTTTA TTGCCCGCAT CGCGGGGGCG
GAGTTTGTGC TAGTGCAAGC CCATAAGCCC TCACAGCGTG AGACTCACAA ACTGCTGAAT
CAGATCATCA ACTGCTGCAA TTCCCCCTTT GGTATCGCAG ACTTCGTGAT CACTATTCCC
TCGTCAATCG GCATAGCACA GGCGCCAAGC GACGGTATCG ATGCCGCAAC CCTGCTGCAA
AAAGCCGGAG CTGCCATGAC CATCAGCAAG GCCGAAGGCA TTCCCTACAG CTTTTTCAAT
CAAGACACCC AAATCGCACT GAGCCAGCGC TATCAACTCG AGTCGCACTT AGTCGATGCC
CTGAGAAACA ATGAATTAAG CTTGCACTAC CAACCCTTTA TCGAACTCAA GACTCACAAA
GTGATTGGCG CAGAAGCGCT GCTGCGTTGG CACAATCCCG TGCTAGGACA AGTTACCCCC
GACCGATTTA TCGCCTTGGC CGAACGTAAT GGGCAAATCA TGGAGATAGG TAACTTTGTG
CTCCACAGCG CCATTAAACA AGCCGCCGAC TGGTGCCGAA TACTGCAGCG GGACTTTAAA
ATCGCCATCA ATATCTCCCC CGTACAAATG CGTAATCCCC GCTTTGCCGA ACATATTGCC
GAGCTACTAA CCCTGTACCA ATTACCTGCC ACGGCACTGG AGCTCGAGAT CACCGAAGGA
ATGCTATTGC AGGACGAGCA CTTAGCCCAT AACGCTATTC AGCAATTGCA GGAACTGGGG
ATCCGCATCT CACTCGATGA TTTTGGCACC GGCTACTCTT CCCTAAGCTA TCTGCAAAAG
TATTCCTTCG ATACCTTAAA AATCGACCGC TGCTTTATCA GTAAGCTCGA AAACAGCGAG
CAGGACAGGG AGTTAACTAA GGCCATTATC GCCATAGGTA AAAAGCTCAA ACTGAAGGTG
ATTGCCGAGG GAGTTGAAAA CACCCATCAG GACAGTTTTA TCCGCAGTGA AGAATGCGAT
TTAGGCCAAG GCTACCTCTA TGGTAAACCC ATGACGCCAG CGCAGTTTGA GCGGGAGTTC
ATCCGCAAGC CAGAGGCTTA A
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| Protein sequence | MPYKFALQQS QKERLFADIA IDTGKITVPP EMLENWQQTL DLLSEIVDTP AALIMRVHPT
EIEVFASSHS QGNPYKPHDK EHLGHGLYCE TVMKECRELH IPNALKDADW DKNPDIKLGM
IAYCGLPLHW PDNSTFGTIC MLDSKERNYS QQFRSLLARF QNAIETNLIT LFQQAKLQLH
NQQLEQKVQQ RTHELAELSA KLIREIETRT TTESSLEYHK SYDPLTGLPN RLNLINTLAN
MLEEINRKEK ISVFYLGLRN FKSINDSYGY LIGDKILTIL SQRLQHCTDG HTFIARIAGA
EFVLVQAHKP SQRETHKLLN QIINCCNSPF GIADFVITIP SSIGIAQAPS DGIDAATLLQ
KAGAAMTISK AEGIPYSFFN QDTQIALSQR YQLESHLVDA LRNNELSLHY QPFIELKTHK
VIGAEALLRW HNPVLGQVTP DRFIALAERN GQIMEIGNFV LHSAIKQAAD WCRILQRDFK
IAINISPVQM RNPRFAEHIA ELLTLYQLPA TALELEITEG MLLQDEHLAH NAIQQLQELG
IRISLDDFGT GYSSLSYLQK YSFDTLKIDR CFISKLENSE QDRELTKAII AIGKKLKLKV
IAEGVENTHQ DSFIRSEECD LGQGYLYGKP MTPAQFEREF IRKPEA
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