| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0633 |
|---|
| Symbol | |
|---|
| ID | 4476843 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 743874 |
|---|
| End bp | 746981 |
|---|
| Gene Length | 3108 bp |
|---|
| Protein Length | 1035 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 639725168 |
|---|
| Product | molydopterin dinucleotide-binding region |
|---|
| Protein accession | YP_868277 |
|---|
| Protein GI | 117919085 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0126499 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAGA GTAAACGTCG TTTTATCAAA GGCGCAGCTG TGACGGGTGG CGTGGGATTA
TTTGCCGCAG GTTACAGCCA TACCTTAGCG CAAATGGGCA AGGGGGTGGT GAATGGCAGT
TCGGGCAAGA CCACCCAAGA TCCCATCCAT GGCAATTCGC TAGCCCCTGA ATATAAAGTG
GATTTAACCT CAGGCCAGCT GATTGGCAAC GATGAGCAAC GCATCGCCAA TACCATGTGT
CTCGGCTGTT GGACCAAGTG TGGCGTGCGC GCCCGTATCG ATAATAAGAC CGATAAGATC
CTCCGCATCA GCGGCAATCC CTATCATCCG CTCTCGGCGC GGGAACATAT CGACTTCGAT
ACGCCGATCA AAACCGCCTT TGTGGGCTTG AGTGCCTATC AGGAGCAGGG CTTACAGGGA
CGCTCAACCG CCTGCGCTCG TGGTAATGCC ATGTTAGAAC AATTAGATAG TCCCTATCGC
GTCACCCAAT GCCTTAAACG GGTCGGGCCG CGTGGTAGTG GTCAATGGCA AAGCATCAGT
TTCGAGCAAC TGCTGACCGA GGTCGTCGAT GGCGGTGACT TATTTGGCGA AGGCCAAGTC
GAAGGCTTAA GAGCCATTCG CGATATCAGC ACACCACTCG ATGCCAATAA TCCTGAATAT
GGCCCCAAGG CTAACCAGCT ATTGGTGTCG AACGCTTCGG ATGAGGGCCG CGATGTCATC
ATTAAACGCT TTACCTTCAA TAGTTTCGGT ACACGAAATT TTGCCAACCA CGGCGCCTAT
TGCGGCTTTA CCTATCGCGC AGGTGCGGGT GCCCTGCTCG ACGATTTAAA GAAATACGCT
CACCTTAAAC CCGATTGGGA CAATAGCGAG TTTCTGCTGT TTATCGGTAC CTCGCCGCAG
CAATCGGGCA ATCCTTTTAA ACGCCAAGCG CGGCAGTTGG CCAACGCTCG GGTCGATGGG
CGAGAATTCA GTTATGTGGT GGTGTCGCCC ATGTTGCCCA ACACCTCGAA CCAACCCTGC
GCGGGTAACA ATACTTGGCT GCCCATTCGC CCCGCAACCG ACTCCGCCCT TGCCATGGGC
ATGCTGCGCT GGATTATCGA TAACCAGCGC TATGCCAGTG CATTTTTAAC CGCGCCCAAT
GTCGAGGCGG CGAAAGCTGC GGGTTATCGA GGCTTTAGTA ATGCCAGCTT CTTAATCATC
AGCACGCCAA ATCACCCCAG ATACGGCCAA TATTTGTATG CCAGTGATCT CGGCCTGCCC
TTCGAAGGTA AAGCTTACGG CGAGCAAGAC TCACCTCTGG TTGTCGATGC CGCTACTGGG
CAGATCCTAC CCGCCGGACA ATGCGCCAAG GCGCAACTTG AGGTGGAGCA AAGCGTGAAT
ACGCCAAAGG GCGATCTGAG GGTGAAATCG AGTTTTCAAC TGCTCAGTGA AGCCGCGCGC
AGCGTCGAGA TGGCGGACTA TGCCAAGGAG TGCGATATTA GCGAGGCGCA AATTGCCGCC
CTCGCCCACA AATTCACGGA TCACGGCACT AAGGCGGCGG TGATTTCCCA CGGCGGCACT
ATGAGCGCCA ACGGTTTTTA CAGCGCATGG GCGATCATGA TGCTTAACGC CATGATTGGT
AACCTAAATC TTAAGGGCGG CGCAATGGCT AAGGGCGGTA CTTTCCCCGC CTTTGGGGCT
GGCCCAAGGT ACAATTTGCA GGAGTTTGAC GGCATGGTCG AACCTAAGGG CGTATTCCTT
TCCCGCTCTA AGTTCCCCTA CGAGAAAACC TCTGAATACC GCCGTAAAGT CGAGGCGGGT
GAGTCGCCCT ATCCGTCAAA GGAGCCTTGG TTCCCCATCT CATCGCCCCT GCTCGGTGAG
CATTTGACTG CGGCGGTGCA CGGTTATCCC TATCAACTCA AGGCGTGGAT CAACCATATG
GGTAACCCGA TTTATGGTCA GGCGGGTCTC GGCGAAGCTA TTGGTGCACA ATTAAAAGAC
CCCAAAGTAT TGCCGCTATT TATCAGCATC GACAGCTTTA TCAATGAGAC CTCGGCGCTG
TCGGACTACA TAGTGCCCGA CACTTTAACC TATGAATCTT GGGGCTGGAG CGCCGCGTGG
CACGGCACGC TCACTAAAGA AGCCACCGGG CGCTGGCCGA TTGTCGAGCC GAGGGTCGCC
AAAACCGCCG ATGGCGATGT GATTTGTATG GAATCCTTCC TTAGCCAAGT GGCGATAAAG
CTCAATCTGC CCGGCTTTGG CGCCAATGTG GTCAAGGCCG CAGATGGCAG TTTGCATCCC
CTGATCCGCG CGGCCGATTT CTCGCTCTAC GGCGCGGCGA ACGTGGCCTA CCTTGGAAAA
CCCGTTGCCG ATATCAATGC CGAAGATATG TACTTCAGTG GTGTTGGGCG CATTCAAGCG
GAACTCAATG CCAGACTCAA ACCCGAAGAG GTCAAAAAAG TCAGTTACTT ATTTGCCCGT
GGCGGCCGCT TTGAGAATAT CAGCGCGGGA CGCGATGAGG CGGGCAACCC CAGCAAGGTT
TGGCCAAAAC CTTTAATGCT GTGGAACCCA GAGGTCGGCA GTCGGCGCAA TAGCTTAAGC
GGTGAATATA TGAGCGGCTG TCCACGGCGT TATCATCCTG CGCTCGCCAA CGGCACACCC
TTGGAGCAAG CATTCAATAA GTCACAGTGG CCGCTGCTGA TCAGCAGTTA TAAGTCGCAT
ACCATGAGTT CGATGAGCAT AGGTTCGGAT CGTTTGCGCC AAGTGCACCC CAATAATCCG
GTGCGCATCA ATGAGCAAAC CGCCGCACGC CTTGGCATCA AGACCGGAGA TACGGTCAAG
ATCAGCACGC CAAATGGCAG TGTGGTGGCC TTGGTGGAAT GTGTGGCGGG CGTGCATCCC
GACTGCATTG CCATCGAGCA CGGTTATGGC CATAAGGAGT TAGGCGCGCG GGACATAGTC
ATCGATGATA AAAAGATTGC CGCCAATCCG CTGATCCGCG TCGGAGTCAA TATGAACGAC
TTGAATCTGT TCGACCCAAG CCGCCATGGG CGCTATCCGC TGGTGGACTG GGCCAGCGGT
GCATCGGCGC GGCAAGGACT GCCCGCCAAG ATAGAGAAAA TCGCTTAA
|
|---|
| Protein sequence | MDKSKRRFIK GAAVTGGVGL FAAGYSHTLA QMGKGVVNGS SGKTTQDPIH GNSLAPEYKV
DLTSGQLIGN DEQRIANTMC LGCWTKCGVR ARIDNKTDKI LRISGNPYHP LSAREHIDFD
TPIKTAFVGL SAYQEQGLQG RSTACARGNA MLEQLDSPYR VTQCLKRVGP RGSGQWQSIS
FEQLLTEVVD GGDLFGEGQV EGLRAIRDIS TPLDANNPEY GPKANQLLVS NASDEGRDVI
IKRFTFNSFG TRNFANHGAY CGFTYRAGAG ALLDDLKKYA HLKPDWDNSE FLLFIGTSPQ
QSGNPFKRQA RQLANARVDG REFSYVVVSP MLPNTSNQPC AGNNTWLPIR PATDSALAMG
MLRWIIDNQR YASAFLTAPN VEAAKAAGYR GFSNASFLII STPNHPRYGQ YLYASDLGLP
FEGKAYGEQD SPLVVDAATG QILPAGQCAK AQLEVEQSVN TPKGDLRVKS SFQLLSEAAR
SVEMADYAKE CDISEAQIAA LAHKFTDHGT KAAVISHGGT MSANGFYSAW AIMMLNAMIG
NLNLKGGAMA KGGTFPAFGA GPRYNLQEFD GMVEPKGVFL SRSKFPYEKT SEYRRKVEAG
ESPYPSKEPW FPISSPLLGE HLTAAVHGYP YQLKAWINHM GNPIYGQAGL GEAIGAQLKD
PKVLPLFISI DSFINETSAL SDYIVPDTLT YESWGWSAAW HGTLTKEATG RWPIVEPRVA
KTADGDVICM ESFLSQVAIK LNLPGFGANV VKAADGSLHP LIRAADFSLY GAANVAYLGK
PVADINAEDM YFSGVGRIQA ELNARLKPEE VKKVSYLFAR GGRFENISAG RDEAGNPSKV
WPKPLMLWNP EVGSRRNSLS GEYMSGCPRR YHPALANGTP LEQAFNKSQW PLLISSYKSH
TMSSMSIGSD RLRQVHPNNP VRINEQTAAR LGIKTGDTVK ISTPNGSVVA LVECVAGVHP
DCIAIEHGYG HKELGARDIV IDDKKIAANP LIRVGVNMND LNLFDPSRHG RYPLVDWASG
ASARQGLPAK IEKIA
|
|---|
| |