Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_0622 |
Symbol | |
ID | 4476832 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 728053 |
End bp | 730560 |
Gene Length | 2508 bp |
Protein Length | 835 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 639725158 |
Product | ATP-dependent helicase HrpB |
Protein accession | YP_868267 |
Protein GI | 117919075 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1643] HrpA-like helicases |
TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.53674 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGAACAATC TACCCATTCA TTCCTTATTG CCATCCCTGC GCGATGCCTT TGCGAAACAT GCGCAAGTGA TCCTCGAAGC GCCAACGGGT GCGGGTAAAT CGACCGCATT GCCCTTAGCC ATGCTGGATT GGCCTGAGAT TTCTGGGCGG ATTTTAATGC TGGAACCCAG GCGTGTGGCT GCCCGTAGCG TGGCGCAATT TATTGCCAGT TGTCGGCAGC AGGCGGTAGG GCAAGAGGTA GGTTATCGCG TGCGCGGCGA GTCAAAGGTC AGTGGTGAAA CTCGACTTGA GATTGTCACC GAAGGGATTT TAACTCGCAT GATCCAGCAA GATCCTGAAT TAACAGGCAT CGAGATGATC ATTTTCGACG AGATCCACGA GCGGCATTTG ACCACAGATC TCGGTTTAGC CTTGGCGCTC GAAGTGCAAA GCTCGCTGCG GGATGACTTA AAAATCCTCG CCATGTCGGC AACCTTATCT GGCCTGACAT TGGCCGAGTT GATGCCCGAT GCCGCCCTGC TACAGAGTGA AGGGCGCAGT TTCCCGGTCG ACATTCGATA TCGTCCCGTT GCTGGGCAGC AGCATTGGCT CGATCATCTG AGCCGCGTTG TGCTCGATGC CGCGATATCC GTAGGCGATA AGGGGCCACA GGATATTTTA GTGTTTTTGC CCGGTAAAGC CGAAATCCTC CGAGTGGCGC AGTATCTAGA AGAGCGCCTC GATAGCAGTC ACGTGGCGGT GTGCCCACTC TATGGCGAGC TATCGGCGCA GGAACAGGAC AGGGCGATAA AGGCCGACAG CAGCAGGCGC AAAATTGTGC TCTCCACCAA CGTGGCCGAG TCGAGCTTGA CCATCGAGGG CATTGGCCTT GTTATCGACA GCGGTTATAA ACGCCAAGCC AGTTTTAATC CTAAAACTGG GGTGACACGT TTAAGCCTTA AGCGCATCAG CCAAGCCTCG GCAACCCAGC GTGCTGGCCG TGCGGGGCGT TTGGCGGCGG GCGAGTGTAT CCGTTTATGG GGCCAAGAGG AGCATCAGCG TCTGCTCAAG GCCGATGAAC CCGAAATTAG CCAAGCCGAC TTAGTCGCCA TGGCCCATGA CTGTGCCTAC TGGGGCGCGA AATCCTTCAG CGACTTACTG TTATTGACTG CACCGCCCAC GGTAAATGAG GCATTAGCTT GGCAACTGCT TCAGCGTTTA GGCATGGTCG ATGAACACAA CAAGCTGACT GCGCATGGCA AAGCGGCCTA TGAGCTGGGG TGTCATCCGC GCCTCGCACA TATGTTATTG GTGGCTAAAT CTCGCGATGA ACATCAACTG GCGGCCTTAG CCTGTTTACT GGCGGGGATT TTAGAGGCGC GGGGATTGCC ACGCAAAGGC GCCGATATCA TGAATTATTT GCACTTTGCC ACCCAAGGCA GTGCGGGGCA GCAAGCCAAA CAATGGCTTA AAAAGCTGGC GCTAGATAAG CAATTTACTC AGGCCGATTT AGTGGCCATC GCCTCCCATG CCCATCATCA GGATGCCGGT TTGCTGTTGG CGCTGGCTTA TCCTGACCGG ATTGCCAAAT CCCGTGGCGT TGAGGGGTAT CAATTGGCCA ATGGAACGGG CGTGGTGCTT AGCGCCGAAG ATGCCTTAGC GCAAACGCCT TGGTTGGTGG TGGCAGATTA TCAAGAAACC GAAGGCAAGA ATGCCGGGCG GATTTATCTC GCCAGTCCAT TATTGCCAAG TCTGTTCGAT GAGGAGTTGG CCGAGTTGGT GGAGCGTTAT GACCAATGCG GCTGGGATGA AGCTAAAGGC CGCGCTGTGG CCGAGCGCCA AACCAAAGTC GGGCAGATTT TACTGAAATC AGAGGCTATT GCTAATCCGA ATCGCGGCCA AATTGTGGCG GCATTACTGA GTTACATTCG CCAGCAGGGG TTACAAATCC TCAATTGGCA CGATAACTTA GCGCAGTTTC AGGCTCGATT ACAGTTAGCG CGCGATTTAG ATCCGAATGC CGATTGGCCG GATATGAGCG ACACCGCGCT GCTGGCAAAC CTTGAAACAT GGCTGGCGCC CTACCTTGAA AATGTGAATA ATCTGCCGCA ATTACAAAAA CTCGATTGCT TTAGTTTGCT GGTAAACCAA TTAACTTGGT CACAGCAACA GGCACTCGAT GCGCTGCTGC CCACCTCATG GCCGTTAGCC ACGGGCACCT TCGCGCCGAT ATTGTACGAT GCCTCGGGGC GAGCCTTGCT GCGGGTACGT TTGCAGGAAA CCTTTGGCAT GGCAGACAGC CCGCTACTGG CTCAAGGTAA GCTTAAGGTG ACGATGGAAT TGCTGTCACC GGCGCAGCGC CCCTTGGCTC TAACAGCGGA TCTCGCCAGT TTTTGGCAAG GGCCCTATGT GGAAGTGAAA AAAGAAATGC GTGGGCGTTA TCCTAAACAC CTGTGGCCGG ACGACCCTGC CAATACGCAG CCCACAAAAT TTACCAAGAA GAAAACCTTA GGTTTATCTC AGTCATAG
|
Protein sequence | MNNLPIHSLL PSLRDAFAKH AQVILEAPTG AGKSTALPLA MLDWPEISGR ILMLEPRRVA ARSVAQFIAS CRQQAVGQEV GYRVRGESKV SGETRLEIVT EGILTRMIQQ DPELTGIEMI IFDEIHERHL TTDLGLALAL EVQSSLRDDL KILAMSATLS GLTLAELMPD AALLQSEGRS FPVDIRYRPV AGQQHWLDHL SRVVLDAAIS VGDKGPQDIL VFLPGKAEIL RVAQYLEERL DSSHVAVCPL YGELSAQEQD RAIKADSSRR KIVLSTNVAE SSLTIEGIGL VIDSGYKRQA SFNPKTGVTR LSLKRISQAS ATQRAGRAGR LAAGECIRLW GQEEHQRLLK ADEPEISQAD LVAMAHDCAY WGAKSFSDLL LLTAPPTVNE ALAWQLLQRL GMVDEHNKLT AHGKAAYELG CHPRLAHMLL VAKSRDEHQL AALACLLAGI LEARGLPRKG ADIMNYLHFA TQGSAGQQAK QWLKKLALDK QFTQADLVAI ASHAHHQDAG LLLALAYPDR IAKSRGVEGY QLANGTGVVL SAEDALAQTP WLVVADYQET EGKNAGRIYL ASPLLPSLFD EELAELVERY DQCGWDEAKG RAVAERQTKV GQILLKSEAI ANPNRGQIVA ALLSYIRQQG LQILNWHDNL AQFQARLQLA RDLDPNADWP DMSDTALLAN LETWLAPYLE NVNNLPQLQK LDCFSLLVNQ LTWSQQQALD ALLPTSWPLA TGTFAPILYD ASGRALLRVR LQETFGMADS PLLAQGKLKV TMELLSPAQR PLALTADLAS FWQGPYVEVK KEMRGRYPKH LWPDDPANTQ PTKFTKKKTL GLSQS
|
| |