| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0620 |
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| Symbol | |
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| ID | 4476830 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | + |
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| Start bp | 724932 |
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| End bp | 727118 |
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| Gene Length | 2187 bp |
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| Protein Length | 728 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639725156 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_868265 |
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| Protein GI | 117919073 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.669177 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.626171 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAGATG GTTTAGCAAA TCCACTCCAA CAGGCATTAG TGACGATTTT TAGCGAAACG
CCGCTAGAAA CCCTAGAGCA AAATGTTGAT CAAGCCCTAG AGGCCATCAC GCTGCAGTTG
CATTGTGATG GCGTATTTGT GCTGACGGGC AGTTTAGCCC TAGACCATCT GCGTACCCGT
AATCTGTACT TAAAACCGCA ATTTAGCCAG GGCCAACAGG CACGGGTCTG GCCGCTTGCG
CGTATGCCGT TTTTTCGCTC CTTAGTGAGA ACCCCCACAC TGCTGAATCT TCCCGATGTC
GATACCTTGC CCGCAGAGGC TCAAGCGGAG CGGGCGTTAC TTCGTGATTG GAACGTTAAA
AGCCTATTGG TGTTACCGCC AGTGGTGTTT GGCGAAACCC GTATCGCCCT TGGCGCAGTC
AATTGCTCGG AATGCTGTGA ATGGAGTGCG GAGTTTATTC GGGAGTTTCA ACATGCCGCC
GTGATGATTG GCTCGGCGAT GGAACTGACC CGTATTGCCC ACGATATGTT GGCCAGTGAG
CACAAATATC GCGAAGTTTT TAATCAATTG CCTTTAGCCT GCGCCCTGCT CGATAAACAG
AATCAACTGA CCATGCTGAA CAAAGTCGCG TTGCAAACCC TGCCGGTGCA GCATGGATAC
GATTTATTTA GCATGGTGCG CGAAGAGGAG CATGCCATGC TCACCGACAC GCTGCACATG
GTGCGCGAAG GCGTATTGGG GCAAGCCTGG TGTGAGTTAC CCTTAAAATC TAACCTGCAG
TTGGATTGGC TGAGGCTGAG CTTTAGCCAA ATTCACGGCA ATAAAGACAC CCTAGTGATG
ATTGCCGAGG ATGTTAGTGA AAAATATCGC CTCGCCGATG AGCTGTCCTT CCATGCCAAT
TATGATGCTT TGACTGGCTT ACCGAATCGG TTGCATTTTG AGGCCTTACT CGAAAATCTG
CTGCAAACCA AAGATGAGAT GCCCACCTGC GTTGCCTTTA TCGATGTCGA TCAGTTTCAG
GTGATCAACA ATGTGAGCGG CCATCAGGCC GGTGATAAAT TACTGTGCCA GCTTGCATTA
CGTCTCAAGC AATTGGTGCG TAAGGGCGAT ATTGTCGCGC GTTTGGGCGG CGATGAGTTT
GGGATTTTAA TGCATTATTG CAATGTGGAT TCGGCGCAGC ATATCGCTAA GCGGATTTGT
ACTCAGTTAG CAACTCACGA ATTTATCTGG GAAAACCGCT GCCACAATGT CAGCGTCAGT
ATGGGGATAG CTAAGTTCGA TAGGTCGGCC TCTGATATTT ATACCGTGAT GAGCCATGCT
GATGCGGCCT GTCGTCTCGC CAAGGATAAG GGCCGCAATG GCTGGCACTT GTACAGTGCC
AAAGATCCTA AAATGACCCG CCTCTATACC GAGATGATGG CCTCGGTCGA TATCGTCAGC
GCTCTCGCGC TAAATCAATT TGAGCTGTAT TTCCAAAGCA TTGCCCCGTT AAGTCGCGAA
GAATCCGGCC TGCATTTAGA GGTGCTACTG CGGATGGTGC AGGCCAATGG CACTATTGTT
TCGCCGGCGA TCTTTCTCCC TGCGGCGGAG CGTTATAACT TGGCGGCTAA GGTCGACCTG
TGGGTGATCG ATAATCTGCT GAAGTGGGGC AGTAGCCATT TGGATATTTG GCAACAGCTG
GAGTTGGTCT CGGTCAATCT GTCGGCGACC TCGTTAGGTG ACAGCGAGTT TATGAATTGG
CTCGAAATGC GCCTGATGAC TGAACCTGAG CTGGTGGATA AGCTCTGCAT TGAGATCACC
GAAACCGCCG CGGTGAGCCA ATTAGATCAG GCCACTAAAT TGATTGAAGT GCTGAGGCCA
TTAAACTGCC AACTCGCGTT GGATGATTTT GGCGCGGGAT TTTCAAGCTT TGCCTACCTT
AAACGCTTGA ACGTGGATTA TGTCAAAATC GACGGCCAGT TTGTGATTAA TCTCTGCGAA
GACGAGGCTG ACCAAGCCAT CATCAAAGCC ATTTGTCAGT TAGGACAAGA TATGGGCTTC
GATGTGGTGG CGGAGTTTGT TGAATCCACC GAAATTGCCA CTAAGTTAAA AAGCCTAGGC
GTGGATTATG CCCAAGGTTA TGCCATCAAC AAGCCTATGC CGTTACTGAC CTTAACCTCT
GGCTTGGCCG AACCTTGGCT ACGCTAA
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| Protein sequence | MSDGLANPLQ QALVTIFSET PLETLEQNVD QALEAITLQL HCDGVFVLTG SLALDHLRTR
NLYLKPQFSQ GQQARVWPLA RMPFFRSLVR TPTLLNLPDV DTLPAEAQAE RALLRDWNVK
SLLVLPPVVF GETRIALGAV NCSECCEWSA EFIREFQHAA VMIGSAMELT RIAHDMLASE
HKYREVFNQL PLACALLDKQ NQLTMLNKVA LQTLPVQHGY DLFSMVREEE HAMLTDTLHM
VREGVLGQAW CELPLKSNLQ LDWLRLSFSQ IHGNKDTLVM IAEDVSEKYR LADELSFHAN
YDALTGLPNR LHFEALLENL LQTKDEMPTC VAFIDVDQFQ VINNVSGHQA GDKLLCQLAL
RLKQLVRKGD IVARLGGDEF GILMHYCNVD SAQHIAKRIC TQLATHEFIW ENRCHNVSVS
MGIAKFDRSA SDIYTVMSHA DAACRLAKDK GRNGWHLYSA KDPKMTRLYT EMMASVDIVS
ALALNQFELY FQSIAPLSRE ESGLHLEVLL RMVQANGTIV SPAIFLPAAE RYNLAAKVDL
WVIDNLLKWG SSHLDIWQQL ELVSVNLSAT SLGDSEFMNW LEMRLMTEPE LVDKLCIEIT
ETAAVSQLDQ ATKLIEVLRP LNCQLALDDF GAGFSSFAYL KRLNVDYVKI DGQFVINLCE
DEADQAIIKA ICQLGQDMGF DVVAEFVEST EIATKLKSLG VDYAQGYAIN KPMPLLTLTS
GLAEPWLR
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