Gene Shewana3_0600 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0600 
Symbol 
ID4476635 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp703661 
End bp704554 
Gene Length894 bp 
Protein Length297 aa 
Translation table11 
GC content46% 
IMG OID639725136 
ProductHflC protein 
Protein accessionYP_868245 
Protein GI117919053 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID[TIGR01932] HflC protein 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00172359 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000122116 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGGTAGAT TAAGTATTGT TCTGATTGCC ATCGTATTAG GCATAGGTCT GTCATCTGTG 
ATGGTGGTTA ACGAAGGCGA ACGTGCGATT GTGGCGCGTT TCGGTGAAAT CGTTAAAGAC
AAGGTTGACG GCAAACCAGT GACCCGCGTT TTCGCCCCTG GCATACACTT TAAAGTGCCG
GTGATCGATA AAGTGAAGTT ACTCGATGCG CGTATCCAAA CCTTAGATGG TGCAGCGGAT
CGTTTCGTCA CCTCTGAGAA GAAAGATTTG ATGGTCGACT CCTATGTGAA GTGGCGTATT
TTCGACTTCG AAAAATACTA CCTCTCCACT AACGGTGGTA TTAAGTCGAA TGCCGAGACC
TTACTACAAC GTAAGATCAA CAACGACTTA CGTACCGAGT TTGGTCGCCG CACTATCAAA
GAAATCGTTT CTGGTAAACG CGATGAGCTG CAAAATGATG CGTTAGAAAA CGCCTCTGAA
AGCGCTAAAG ACTTAGGTAT TGAAGTGGTT GATGTGCGTG TGAAGCAAAT CAACCTACCT
GCAAACGTGA GTAACAGTAT TTACCAACGT ATGCGTGCCG AGCGTCAAGC GGTTGCTAAA
GAGCATAGAG CACAGGGTAA AGAGCAGTCT GAAATTATCC GTGCGACCAT TGATGCCAAC
GTGACCGTGA AGATTGCCGA AGCCGAGCGT AAAGCCTTAA CCATCCGCGG TGAAGGTGAT
GCGCAAGCCG CGAAAATTTA TTCTGATGCT TACAGTAAAG ATCCCGAGTT TTTCAGCTTC
TTACGTAGCT TAGATGCTTA CCGTGCGAGT TTCTCCGGTA ACTCTGACGT CATGGTATTA
GAACCTGATA GCGAGTTCTT CAAATATATG AAGAGCACTT CACCTAAGAA GTAA
 
Protein sequence
MGRLSIVLIA IVLGIGLSSV MVVNEGERAI VARFGEIVKD KVDGKPVTRV FAPGIHFKVP 
VIDKVKLLDA RIQTLDGAAD RFVTSEKKDL MVDSYVKWRI FDFEKYYLST NGGIKSNAET
LLQRKINNDL RTEFGRRTIK EIVSGKRDEL QNDALENASE SAKDLGIEVV DVRVKQINLP
ANVSNSIYQR MRAERQAVAK EHRAQGKEQS EIIRATIDAN VTVKIAEAER KALTIRGEGD
AQAAKIYSDA YSKDPEFFSF LRSLDAYRAS FSGNSDVMVL EPDSEFFKYM KSTSPKK