Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_0597 |
Symbol | |
ID | 4476632 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 700872 |
End bp | 701144 |
Gene Length | 273 bp |
Protein Length | 90 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 639725133 |
Product | RNA-binding protein Hfq |
Protein accession | YP_868242 |
Protein GI | 117919050 |
COG category | [R] General function prediction only |
COG ID | [COG1923] Uncharacterized host factor I protein |
TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.448781 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.00000118044 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGGCTAAGG GGCAATCTTT ACAAGACCCA TTTTTGAACG CACTACGCCG CGAGCGCGTT CCTGTATCAA TTTACTTGGT AAACGGCATT AAACTCCAAG GACAGGTAGA GTCGTTTGAT CAGTTTGTCA TTCTGTTGAA AAACACAGTG AGCCAAATGG TTTACAAACA CGCTATTTCT ACCGTAGTAC CTGCTCGTCC ATTTAACGTT GCTGGCCATC AAAATGCCCA GGGCGGTTAT GGCGCGCAAG ATGATATGCC AAGTGGCGAA TAA
|
Protein sequence | MAKGQSLQDP FLNALRRERV PVSIYLVNGI KLQGQVESFD QFVILLKNTV SQMVYKHAIS TVVPARPFNV AGHQNAQGGY GAQDDMPSGE
|
| |