| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0570 |
|---|
| Symbol | |
|---|
| ID | 4476531 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 662313 |
|---|
| End bp | 663287 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639725102 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_868215 |
|---|
| Protein GI | 117919023 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAACG ATCAAAGCGC AATGAACGAA CTCCATTGGC TTATCGATAT GGTGCAAACC
ATCGAAGTGG GTCTAGTGGT ATTAGATCGC GATTATAATA TCCAACTGTG GAACGGCTTT
ATGGAAAACC ATAGCGGCGT ATCCCCTAAT TCGATTAAAG GGCAAAACCT GTTCACCCGT
TTTCCTGAGC TACCAGCGAC TTGGTTAAAG CAAAAGATGG AATCGGTTTT TATGCTGAAA
AATCGAGCCT TTATCAGCTG GGAACAAAGA CCCTACGTGT TTCAGTTTAA AAACTACCGC
CCCATTACCG GACGGGCCGA TTTTATGTAC CAGAACGTGA CACTGTTGCC TCTGGCCTCA
TTAACCGGAA AAATAACCCA TATCAGCGTG ATTATTTATG ATGTCACCGA CATCGCCGTC
AACAAGCTAC AGCTCAAGGC CGCCAACGAG CAGTTAGAAC GCCTCAGCCA GACCGATGGC
CTGACACAGC TCCATAATCG CCGCCATTGG CAACAATGTT TAGAGCATGA GTTTGACCTC
CACGCCCGTT ATTCGGGGAT GTCGAGCTTG GTCATGATTG ACATAGACCA TTTCAAAAGA
ATCAACGATA CCTACGGCCA TGTCGCGGGT GATAAGGTGA TTCAGCATAT CGCCCATATC
CTAAGCCATT CATTAAGGGA GACCGATTGT GTCGGCCGCT ATGGTGGTGA GGAGTTCGCT
GTGGTCATGC CCAATACTTG TGGCGCCGAT GCCCTCAACT TTACCGAGCG TTTGCGGGAA
AGAATTGCCG ACTCCACCAT AGTGTACGAA GGGCTGAAGA TAAAAGTCAC AGTAAGCCTA
GGCGTGTGTG AAATCGGCAA ACATATCACC AGCAGCTCTG GCTGGATTTC TTGCTCAGAC
AAAGCCTTAT ACGAAGCCAA GCAAAAAGGA CGTAACTGTA GCGTCCTGCA CACCGCACAA
ACCAGTGGTT ACTGA
|
|---|
| Protein sequence | MSNDQSAMNE LHWLIDMVQT IEVGLVVLDR DYNIQLWNGF MENHSGVSPN SIKGQNLFTR
FPELPATWLK QKMESVFMLK NRAFISWEQR PYVFQFKNYR PITGRADFMY QNVTLLPLAS
LTGKITHISV IIYDVTDIAV NKLQLKAANE QLERLSQTDG LTQLHNRRHW QQCLEHEFDL
HARYSGMSSL VMIDIDHFKR INDTYGHVAG DKVIQHIAHI LSHSLRETDC VGRYGGEEFA
VVMPNTCGAD ALNFTERLRE RIADSTIVYE GLKIKVTVSL GVCEIGKHIT SSSGWISCSD
KALYEAKQKG RNCSVLHTAQ TSGY
|
|---|
| |