| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0554 |
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| Symbol | |
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| ID | 4476515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 646700 |
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| End bp | 648454 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 639725086 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_868199 |
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| Protein GI | 117919007 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0111263 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAGTT TAGATCTGGC AAAAGAGCTT GATAAGATAA TCGCAAAGGG GGCTATCAGC
CCACTTTTTC AGCCCATATT CAATATCTTG GAACACAAGA TCCACGGATT TGAAGCGCTC
AGCCGTGGGC CTGAGCATAG CCCGCTCTAC TCACCCATTC CACTGTTTAA AACCGCGGAA
CATCAGGGTA AATTGAGCGA ACTCGAGACA CTCTGCCGCC GCATTTCGCT GGAGCAATTC
AAACTACGCC AGTTCCAAGG CCGTTTGTTT ATTAATATTT CCCCTAAGGC CCTACTCGGT
CCCACTCATC CAAAGGGCAT GACGCTGCAA CTGCTACAGC AGCTGGGTAT TTCACCGTCA
CAGGTGGTGA TTGAGTTATC GGAGCAATAT CCCGCAGACG ATATCGACTT ACTGAAATCT
TGCCTGAATC ACTATCGTAG CCAAGGTTTT ATGACCGCTA TCGATGACTT GGGAGCGGGT
TATTCGGGTT TACGGCTCTG GTCTGAGTTA TCGCCCGACT ATGTAAAAAT CGATCGCCAC
TTTATTCACC AAATCGATTC GACCCCGGTT AAACAAGAAT TTGTGCGCTC GATTGTCGAA
CTGTGCCAGA GCCTCACCTG CAAAGTGATT GCCGAAGGGA TTGAAACCCA AGAGGAACTC
GCAGTACTCA AACAGCTAGG CATAGTCTAT TGCCAAGGCT ATTTACTCGG ACGCCCCGAG
GCGCAGCCGA GCCGCGCGAT GAAAGCGACC TTAGTGCCGA ATAATACTCA AGTGCAGCCC
AGATACAGTG AATCCGCCGA AAGCCTCTGC ACCAGCGCCA TAACAGTGGT GCCGACACTC
AAGCTTAAGC ACTTAAGCGA TACCTTTAGC TCTCAACCCG CCTTACAGGC CGTGGTAGTG
GTGCAAGATC AACTGCCGCT AGGGATTATT AGTAGAGCGA CTTTGCTGGA GCTTTTTAGC
ACGCCCTATG GTCGAGCCCT GCATGAAAAC CACGCCGTCA GTGAAGTGAT GGACCCGCAA
GTGTTGCAGA TTGAAGCCAA CGAGCCCCTG TCGATCGTGA GCCAATTACT GACCTCGGAG
AGCGCCAATA CCGTCGCCCA GCAATTTATC ATTCTGCGCC GTGGCAAGTT GCTCGGCATT
GGCCACACTA AAGATTTGCT ACAGCGGATC ACCGAGCACA GGATCAAGAT GGCAAGGCAT
GCCAATCCGT TAACGGATTT ACCCGGTAAT GTGCCTATTC AGGAAGAACT CAAACGCCTC
AGAAACCAAC AAAAGCCCTT CTACTTGGCC TATTTTGATC TCTGTCAGTT CAAGCCCTAT
AACGATATTT ACGGTTTCTG CCGCGGCGAT GAGGTGATCT GCGAGGTCGC CAATCTGTTA
GTGAAATACA AGACGGACAA CTGCTTTATC GGCCATGTCG GTGGCGATGA CTTTGTGGTG
ATCAGCACCT GCGAGCAACT CATCGAGCGC TGCCAACGGA TATTGACCGA TTTTGAGGCC
AACAAGTCGC TCTTTTATAG TGCAGAGCAT TGGCAAGCCC AAGAAATGCT CGCCGATGAC
AGGCAAGGAC AAGCCTGTTA TCACAAGTTA ATCAGCCTGT GTGTCGGCGT ACTTACTCCC
GCCCATACCT ATAACTGCAA TGAACATAGC CTATCGACCT TGAGTGCCAA GGCAAAAAAA
CAGGCAAAAT CCGCGAGTAA CGGATTTTGC CTGTTAGAAG AGAGAGACAT AAGCCCCCAA
GCATTGAGTG CCTAG
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| Protein sequence | MTSLDLAKEL DKIIAKGAIS PLFQPIFNIL EHKIHGFEAL SRGPEHSPLY SPIPLFKTAE
HQGKLSELET LCRRISLEQF KLRQFQGRLF INISPKALLG PTHPKGMTLQ LLQQLGISPS
QVVIELSEQY PADDIDLLKS CLNHYRSQGF MTAIDDLGAG YSGLRLWSEL SPDYVKIDRH
FIHQIDSTPV KQEFVRSIVE LCQSLTCKVI AEGIETQEEL AVLKQLGIVY CQGYLLGRPE
AQPSRAMKAT LVPNNTQVQP RYSESAESLC TSAITVVPTL KLKHLSDTFS SQPALQAVVV
VQDQLPLGII SRATLLELFS TPYGRALHEN HAVSEVMDPQ VLQIEANEPL SIVSQLLTSE
SANTVAQQFI ILRRGKLLGI GHTKDLLQRI TEHRIKMARH ANPLTDLPGN VPIQEELKRL
RNQQKPFYLA YFDLCQFKPY NDIYGFCRGD EVICEVANLL VKYKTDNCFI GHVGGDDFVV
ISTCEQLIER CQRILTDFEA NKSLFYSAEH WQAQEMLADD RQGQACYHKL ISLCVGVLTP
AHTYNCNEHS LSTLSAKAKK QAKSASNGFC LLEERDISPQ ALSA
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