| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0488 |
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| Symbol | |
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| ID | 4476717 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 569337 |
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| End bp | 571376 |
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| Gene Length | 2040 bp |
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| Protein Length | 679 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 639725022 |
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| Product | cytochrome c-type biogenesis protein CcmF |
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| Protein accession | YP_868135 |
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| Protein GI | 117918943 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1138] Cytochrome c biogenesis factor |
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| TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF
[TIGR03145] cytochrome c nitrate reductase biogenesis protein NrfE |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATAAATA TGACTCCAGA AATAGGACAT ATATTGCTAA TCATCAGCAC TGTGTTGGCA
TTACTCTCCG CCATTATTCA TTTTTTTAGC ATTCATCAGT CACAACTTTA TTTAATCGAG
TTCGGCAATA AATTATTTAA CGCCATGTTT ATAAGCTTAT TGAGCGCACT CTTATGCCTT
ATTTACAGCT TTATTAGCGA TGACTTTTCG GTTGCCTATG TGGCGAACCA TTCCAATAGC
CAGCTTGCCC TCGGCTATAA AATTGCCGCT GTGTGGGGCA GCCATGAAGG CTCGATGCTA
TTTTGGGTTT TCGCCATCGC GTTATGGGGT GCCATTATCA ATTGCCGCCA AGCGGGCAAA
TTCGCTGGCT TAGGTAATGC CGATGTGCAG ACAGATAAAG CCTACTTTGC ACGGCTACTG
GCGATTCTCG CCTTAGTTAT CCTTGGCTTT AATCTGTTTT TACTCTTTAC CTCCAATCCC
TTTGCCCGAT TACTGCCCAA TATTCCGATT GCGGGGCGTG ACCTCAATCC GATATTGCAA
GACATTGGCT TAATACTGCA CCCGCCGATG CTGTTTTTAG GTTATGTCGG GCTAACCGTT
TGCTTTGCCG CAGCGCTAGC ATCCCTGCTG GGTGGCGCAT TAGTGCATCG CCACCTCGAA
TACTTGCGGC CTTGGGTATT ATTGGCGTGG ATTTTCCTCA CGGGAGGCAA TGCCTTTGGT
TCTTGGTGGG CCTATAACGA GCTCGGCTGG GGCGGTTGGT GGTTTTGGGA TCCCGTTGAA
AATGCTTCTT TTATTCCTTG GCTAGTCGCC ACTGCACTGG TGCATTCTTT AGTGCTGACC
AGAAAGACCC AAGGCTTTGC CCTGACCACG CTATTTTTGT GTATCTTGGC ATTTTCACTG
AGCTTACTCG GCAGCTTTTT GGTGCGCTCC GGCATAGTAC AATCGGTACA TGCCTTCGCG
GCAGATCCCA CCAGAGGCAT GTCAATACTC TGTCTTTTGG TGCTTTTTGT CGGTGCTGCG
CTATTAATCT TTGCAATCAA AGCGCCAACA TTGAAACGAG AAGTCAGCCA TAACCTATTG
AGCAAAGAGA CACTGTTACT CCTTGGAGCC ATTGTATTAG TAGTTGCAGC CTTTTCCGTT
CTGCTGGGCA CCTTTTATCC CCTGATCTAC GAGCTGCTAG GCTTAGGCAC GTTGTCGGTC
GGCGCACCTT ACTTTAATGC GATTTTTGTC CCATTGACCT TTATCGCAGT GATCTTAATG
GGCATCGCGC CGTTAATCGC TTGGAAGGCG TCAACTCGCA AGCCACTCAA AGTATTAGCC
TTGCCCTCTG TCGTCATTGT GATTATCGCG GCACTGATGA GTGTTCGAAC CCAAACCGAT
GGAGCCTTAT TCCTATTCCT TGGCTGCACC AGCGCGCTGT TTTTGCTCTG CTGTCTTGGA
ATGAGTGTGT GTATGAAATC CCAAGCAATG ACGCCTCCCA AGCCCGTCAA GCCTTCAGCG
TCAAAACGCG CAAAACTAGC CATGCTAGTC GGTCATTTTG GCGTGGCAGT CAGCATTATC
GGCGCGACAG CAGTATCATT TTTTGAGCAG GAAGCCCTGC TGCGTATGGG GCCTGGGCAA
GGTAAACCAC TTGCCGATTA TGTGCTGGTG TACGAAAGCA CAGAACCAGT AGAAACCCCA
AGTTTTACAG CGATTCAGGC CAATATCAGT ATCCGCGATG CCAAGCAGGA TGATCTTGTG
CTGGGTTATC TGCATCCACA GCGGCAAACC TTTAATAGTA ATGGCATGGA AGTATCCCAT
GCGGGCATAG ACCACGGTTT TTGGCGGGAT CTCTATGTCT CTATGGGACT ACAACTGAGC
GACACCGAAT ACCTGATCCG CATTAGTTAT AAACCCTTAG CCACTTGGAT CTGGCTGGGT
GCTTTATTGA TGATGCTCGC TGGCGCGATT GCCGCTTGGC CAATCAAACA ACCCCATAGA
GTCCCACAAA CAAAGGCGTT GAATGTAACC AATTCACCAA GGGAGACAAT GTCGTTATGA
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| Protein sequence | MINMTPEIGH ILLIISTVLA LLSAIIHFFS IHQSQLYLIE FGNKLFNAMF ISLLSALLCL
IYSFISDDFS VAYVANHSNS QLALGYKIAA VWGSHEGSML FWVFAIALWG AIINCRQAGK
FAGLGNADVQ TDKAYFARLL AILALVILGF NLFLLFTSNP FARLLPNIPI AGRDLNPILQ
DIGLILHPPM LFLGYVGLTV CFAAALASLL GGALVHRHLE YLRPWVLLAW IFLTGGNAFG
SWWAYNELGW GGWWFWDPVE NASFIPWLVA TALVHSLVLT RKTQGFALTT LFLCILAFSL
SLLGSFLVRS GIVQSVHAFA ADPTRGMSIL CLLVLFVGAA LLIFAIKAPT LKREVSHNLL
SKETLLLLGA IVLVVAAFSV LLGTFYPLIY ELLGLGTLSV GAPYFNAIFV PLTFIAVILM
GIAPLIAWKA STRKPLKVLA LPSVVIVIIA ALMSVRTQTD GALFLFLGCT SALFLLCCLG
MSVCMKSQAM TPPKPVKPSA SKRAKLAMLV GHFGVAVSII GATAVSFFEQ EALLRMGPGQ
GKPLADYVLV YESTEPVETP SFTAIQANIS IRDAKQDDLV LGYLHPQRQT FNSNGMEVSH
AGIDHGFWRD LYVSMGLQLS DTEYLIRISY KPLATWIWLG ALLMMLAGAI AAWPIKQPHR
VPQTKALNVT NSPRETMSL
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