Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_0480 |
Symbol | |
ID | 4476709 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 557774 |
End bp | 562834 |
Gene Length | 5061 bp |
Protein Length | 1686 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 639725014 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_868127 |
Protein GI | 117918935 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGTTT TTGGCATTCT TTCGGGTCGT TTAGATAAGG CCATTCGACA CATCTTTACG ACCATTGGCG GCCAGCGTCA AAGCGTAAAA CCTAGCGTGC GTGTTATCTC CTCGCTGGGG TATTTTGCCT GTCTCTTGAG TCTGTCGGCG TCTTTACTGT GGTTATGGCC GAATACGATT GCGGCCAATG AGATGTCACT GCAAGAACAT CGTCAGGCTT TATCCCAATT GACGCCGGCG CAAAAACTCG CCCATAGCCA TAGGGTGAGT ATGATTTTGG AGGCGGATAG ACCCTTTTGG AATCAAGTCG CTAAGTTTGC CAAGATTGCG GCCATGGATC TTAATATCCA GCTCGACATC GTCTACGGCG ATGGCACGCC GGAAACCTTA CTCGCTCTGG GACATGAGGC GATAGATAAC GCCGTTGCTG GGATTATTTT TGTCCCTATC TTAGGTATGG GACAGGACCT CTTAGTGGAG GCCAAACGCA ACAATATCCC CGTCGTGACC ATTAACTCCG AATTTGCCCA AAGCTCATTG GCCTTAAGAA CCCAAAATCC TAACTGGGTT GGTAAGGTGA CGATGAATAG CAGTAATCTG GGGCAAAATC TGCTCGAAAA AATGTTTGAG GAGGAAGCCA GCTCCGAGCA GATGAACCTG TTGCTACTCG CGGGAAGTAA GGACAATCTC GATGTGCAAA AGCGTACCGC TGAACTCAAA AATGCCGTGA GCAGGCAATT TGCCAATGCC AAATTCAAGG TCGTTAATAC CGATTGGAGC GCCTCGGCGG CGCGTGCCGC TTACCTTAAG GCGATACAGC AAGATCCTAA TATTAATACC GTGATTGCAA TGAACACCAC TATGGCCATG GCGGTGACCC ATGAGGCCGA AGCCGATACT TCGCGCCCTA TGCCCCATAT TGGTTCGCTA AGTTGGAATC ATCAATTGGC ACAAGGGATC CAAAAGGGCA CTGTCGCTGC GGGTGTCGGC GGGGTGGAGT TTCAAGGCGC CTTTGGCCTT GTGTTGCTAT TTGATTATTT AAACGGGGTG GATACTCGCG CTAAGGGCTT CGAGTTTCAG GTGTTGCCTT TGATCATCAG CCCCAATAAC TATAACGATT ACTATGAGTT ACTCGATTTT GACTCACTGC AACCTGACTT TTCTCGGGTG TCTCTTGCGC TAAATACGAA TCTGTTTTTG GTGGATTTTC GCTTAGGCAG CTTGATCCCT AATATGGATG TTCACCGCTT TATGACTCAG CTAAGCGTGG AGGAAAGGGC CTTTATCAAC AACAATCCTA TCGTCAAGGT TGGGATTGAT CCTCATTCCG CTCCCATTGA TTTTATTGAT GAAAACGGCA TCCACCGTGG CATGATGGCG GATTATCTCG CCGAGATCAG CCGCGTCGTA CCGCTGATCT TCCAGACCTA TAACGAAGGT TCTTGGCAGC AAGCCATCGA TGAATTTAAG CGGCACGATG TGGATATGTT ATCGCTGGCC TCGGCCAATG CTGGCCGTGA ACAATGGATG TTATTTACCG ATGCCATCAA TCAATATCCG CCTGTGATAG TCACCCATGT CGATGGAGAA CATCCCAGCA GTTTAGAGCA GCTTAAGGGC AAGTCAGTCA GTGTGGTTTC GGGCGATGTG ACACAAACGC AACTGCTTGA AGATTATCCT GAAATCGTCC TTATCCCCTT TGAAAATCTT GAGCAAGCGT TAATGGCGGT GAAGCAACAC CAAGTCGATG CTGCCTTTGT GAATTTCCCG AGCACAGCTT ACTTATTGCA ATCGCCACAG TTTAATCGAC TGCAAATTGT GTCTGCCAGT GACTACCGCT TTGGTATCTC TATGGGGGTG CGTAAGGATT GGCCTGAGCT ACAGAGCATT TTAAATAAGG CTCTGGCTCA AATCCCCCAG GATAAAGTAC GTGAAATTCA GCACCGCTGG GTAAACGTGC AATATGAACT GGGACTCAAG AAGCAGCAAG TATTTGACTG GGCGGTGCGA ATTGCCGTGG CCGTCGTGCT TGTTCTGCTG ATGTTTAGCT TGCGAAACAG AAGGTTAAAT AAAGATATCG CACAGCGGAT CCACACCGAG GAGCAGCTCA GCCTGAGTAT GAATAAATTC CAAGCCTTAT TCGACTCGGC GGTCGACGCC TGTGTGATTA CCGATAGGCA AGGGGTGATT ATTGAATGTA ACTCAGCCCT GTTATCACTA CTTAAATATC AGCATAAACA TCAGCTTATT GGTCGTCGCA CTCTAGTTTA TTATCCACCG CACTTGGGCG AAACCGACAG CGAGACCCTG TTCGAGCAAC GTCTACAGAC TGTGCTGGAG CAGGGGCAGT TGCGATTCGA AGCCGATTTT GTGACCTCAA TGGCGGAAAT TGTCAATGTT GAGGTCACGC TTAAGCGCAT CGAGCTCAAT GGCTCGCTGT TTGTATTGGG CACCTATCAC GATCTGTCGG AACGAAAGCT GATGAATGCC TTGCTTGAAC GCGAGCGGGA TCTGCTCAAA CACGTGTTAG GTAGAAGCCC GATTGGCGTT TGGATCTGTA TCGAAGGCGT CTGCCGCTAT GTGAACGAGC AAATTACCGA GATGACAGGG TTACAAGTGG GCCAATCCGT TTACCCGATT TTTGCGCAGC CCGATGACTA CCGTTGCCAT ATTAGTGAAT TGGATTTAAG TCAAGACAGT ACCGTCTTTG AAACTCAACT ATTTGATTGC AAAGGGCAGC GCCGTGATGT GTTGTTAACG GCGTACCACA CAGTGCAGGA TGGCCAGAAT GCTAACCTCT GCTGGGCCTT GGATATTACC GACACTAAGT CGATTCAGGA TGAGCTGGCC ATCGCTAAGG ACGCCGCCGA GGCGGCAAAC CGTGCTAAGT CTGACTTTTT AGCGAATATG TCCCATGAGA TCCGCACGCC GATGAATGCG ATCCTCGGTA TGTCGTATTT GGTGTTGCAG ACAGAGTTAA GCAGTAAACA GCGGGATTAT GTGGGCAAAG TGCATCAGGC GGCGGGCTCG CTGCTGGGTA TTCTCAACGA TATTTTGGAT TTTTCCAAAA TTGAGGCCGA GAAGATGGAT ATCGAATGCG CTGTGTTCGA TCTCGATGAT GTGCTGTCTA ATTTGGCCAA TGTGGTGAGT TATAAGGTCG AAGAGAAGAA CATGGCGTTT ATCTTCGATC TGCCGCCCGA ATTGCCCCGC TACTACCATG GTGATGGCCT GCGCTTGGGG CAGATCCTGA TCAACTACTG CAATAATGCG GTCAAATTCT CCCATAACGA CAGCAATGTG GTATTGAGCT GCGAGAGTAA AGTGCATGGT GAGCAGGTTG AGCTGACCTT CTGTGTGGAA GATTTTGGCA TTGGTATTCC GGAGCAAAAA CAAGGGGTTC TTTTTGGCTC CTTCGAGCAG GTGGATGCCT CTACTTCTCG GGAATATGGC GGCACAGGCT TAGGTTTAGC TATCTGTAAG CGCCTCGCTC ATCTGATGGG CGGCGAGGTC TGGTGTGAGA GCGAATTAGG CGTCGGCAGT CGTTTTTATG TCAGACTCAC TCTCGATTGT GCCGATACCT ACGATCCTAA TGCTTTGTTT GATCCCTTAG CGGGAGAAAC CGCTAAGCTG ATCGGTTTAC ACCCTAGGTT AGATAAACTG CTGACCATAC ATGGTGTTTC GGCAAACATG CAGGTCGAGA GTGCCGATGT GGGTACAGTG ATCGCCCAAC TTAAACAGTC GTCCACAAGG CAATTGCTGA TCTGCGATTA CAGTGCATTT GTGCCTGAAT TATTGGAAGC ATTGGCGGTT AATCAAGCAT CGCGAATGTT ACTGATTGGT CAGCTAAGCG ATCAGGACTC TCTTAGACAA CTCATTGAAA ATAATGACAG AGTCATATCG CAGACTAAAC CGCTTACGCC GATTGCCATA GGTAATGCGC TGTTATCCCT GCTGGGACAT CAGAGTGAGG ATGGCAGGCA AGTACAGCAG GATCATTCGC TGCATGCCCT TAAGACCCAA CTGGCGGGCG CAGAGGTGTT GTTAGTGGAG GATAACCAGC TCAATCAAGA GTTGGCGGTG GAGCTATTAC GTCAGGCGGG CATCAATGTC ACTGTGGCAA ATCATGGGCT TGAGGCCATT GAGAGAGTTG AGCAGCAGTA CTTCGATTGC GTATTAATGG ATTGCCAGAT GCCTGTGCTC GATGGTTACG AGGCGACGCG TCGCATCCGC GAATTGCCCC AATTTGCCAA CTTACCGATC TTGGCGATGA CGGCCAATGC CATGTCCGGC GATATTGAAA AGGCACTGGC GGTGGGGATG AATGATCAGA TCACTAAGCC TGTGCATGTG AAGGATCTCT ACACTGTGAT GGCGCGCTGG ATCACACCCA AGCAGCGAAA ATCAGTGCCC TTAGTATTGA AACGCTCGAC CCATGCTCAG GATTTACCGC AGCTCGAGGG TTTAAGTATT CAAAATGGTT TGTCGCACTG TGATCACAAC GAATCACTCT ATAGCCATTT GTTGGGCTTA TTTATCAACA CCAGTAAGAC CTTATTGGGG CAGCAGCAAC GTGCCTGGCA GGAGGAAAAC GCCGATGAGC TGCGCTTAAG CTTGCACACC TTAAAGGGCG TTGCCGCCAA CGTCGGGGCG ATGGAGATCA GCCGCCTTGC CAGTGAACTC GAGCTGCAAT GCCTGACTGC GAAGCGGAGT TTTACGGTCG AGCTGCATGA GCAGTTATTG GCGTTACAAA CTGAGTTACA GTGTTTAGTC AGTGGCTTAG AGATCTGGTA TCAGCAGAAC AATAGCATCA AGCCGGAAGC CTCGTTCAGC GATGAAGCGC TCGCGGCCAT GTGGCCGCAG TTAGAGCAAA GCCTGCTGGA ATACAACACC AATGCCTTGG AGTGGGTGAA TAAGCTGACC CATGCGCCGC AGTTACAGGG GGAGTCAGGC CTGCTCAAAC AGTTAAAAAT GGACGTTGAA CTGTTTGATT TTGAACAGGC ATTAGTGCGA CTACTAACCC TTAAACAGGC GCAACAGGCG AGGGCGACGA CATGCAGTTA A
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Protein sequence | MAVFGILSGR LDKAIRHIFT TIGGQRQSVK PSVRVISSLG YFACLLSLSA SLLWLWPNTI AANEMSLQEH RQALSQLTPA QKLAHSHRVS MILEADRPFW NQVAKFAKIA AMDLNIQLDI VYGDGTPETL LALGHEAIDN AVAGIIFVPI LGMGQDLLVE AKRNNIPVVT INSEFAQSSL ALRTQNPNWV GKVTMNSSNL GQNLLEKMFE EEASSEQMNL LLLAGSKDNL DVQKRTAELK NAVSRQFANA KFKVVNTDWS ASAARAAYLK AIQQDPNINT VIAMNTTMAM AVTHEAEADT SRPMPHIGSL SWNHQLAQGI QKGTVAAGVG GVEFQGAFGL VLLFDYLNGV DTRAKGFEFQ VLPLIISPNN YNDYYELLDF DSLQPDFSRV SLALNTNLFL VDFRLGSLIP NMDVHRFMTQ LSVEERAFIN NNPIVKVGID PHSAPIDFID ENGIHRGMMA DYLAEISRVV PLIFQTYNEG SWQQAIDEFK RHDVDMLSLA SANAGREQWM LFTDAINQYP PVIVTHVDGE HPSSLEQLKG KSVSVVSGDV TQTQLLEDYP EIVLIPFENL EQALMAVKQH QVDAAFVNFP STAYLLQSPQ FNRLQIVSAS DYRFGISMGV RKDWPELQSI LNKALAQIPQ DKVREIQHRW VNVQYELGLK KQQVFDWAVR IAVAVVLVLL MFSLRNRRLN KDIAQRIHTE EQLSLSMNKF QALFDSAVDA CVITDRQGVI IECNSALLSL LKYQHKHQLI GRRTLVYYPP HLGETDSETL FEQRLQTVLE QGQLRFEADF VTSMAEIVNV EVTLKRIELN GSLFVLGTYH DLSERKLMNA LLERERDLLK HVLGRSPIGV WICIEGVCRY VNEQITEMTG LQVGQSVYPI FAQPDDYRCH ISELDLSQDS TVFETQLFDC KGQRRDVLLT AYHTVQDGQN ANLCWALDIT DTKSIQDELA IAKDAAEAAN RAKSDFLANM SHEIRTPMNA ILGMSYLVLQ TELSSKQRDY VGKVHQAAGS LLGILNDILD FSKIEAEKMD IECAVFDLDD VLSNLANVVS YKVEEKNMAF IFDLPPELPR YYHGDGLRLG QILINYCNNA VKFSHNDSNV VLSCESKVHG EQVELTFCVE DFGIGIPEQK QGVLFGSFEQ VDASTSREYG GTGLGLAICK RLAHLMGGEV WCESELGVGS RFYVRLTLDC ADTYDPNALF DPLAGETAKL IGLHPRLDKL LTIHGVSANM QVESADVGTV IAQLKQSSTR QLLICDYSAF VPELLEALAV NQASRMLLIG QLSDQDSLRQ LIENNDRVIS QTKPLTPIAI GNALLSLLGH QSEDGRQVQQ DHSLHALKTQ LAGAEVLLVE DNQLNQELAV ELLRQAGINV TVANHGLEAI ERVEQQYFDC VLMDCQMPVL DGYEATRRIR ELPQFANLPI LAMTANAMSG DIEKALAVGM NDQITKPVHV KDLYTVMARW ITPKQRKSVP LVLKRSTHAQ DLPQLEGLSI QNGLSHCDHN ESLYSHLLGL FINTSKTLLG QQQRAWQEEN ADELRLSLHT LKGVAANVGA MEISRLASEL ELQCLTAKRS FTVELHEQLL ALQTELQCLV SGLEIWYQQN NSIKPEASFS DEALAAMWPQ LEQSLLEYNT NALEWVNKLT HAPQLQGESG LLKQLKMDVE LFDFEQALVR LLTLKQAQQA RATTCS
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