| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0469 |
|---|
| Symbol | uvrD |
|---|
| ID | 4476698 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 544732 |
|---|
| End bp | 546900 |
|---|
| Gene Length | 2169 bp |
|---|
| Protein Length | 722 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639725003 |
|---|
| Product | DNA-dependent helicase II |
|---|
| Protein accession | YP_868116 |
|---|
| Protein GI | 117918924 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | [TIGR01075] DNA helicase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.154526 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.949387 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGTAT CTTCTTTACT AGACGGCCTG AATGATAAAC AGCGCGAGGC TGTCGCGGCA
CCGCAATCCA GCATGTTAGT GCTTGCGGGC GCAGGCAGTG GCAAAACGCG AGTATTAACC
CACCGTATCG CGTGGTTAAT GCAGGTCGAA CAGCAGAGCC CTTACTCAAT TTTAGCCGTG
ACGTTTACCA ATAAAGCCGC AGCCGAGATG CGTGAGCGGG TGGAGAAGGT CGCTGGCACC
AATATGGGGC GGATGTGGAT TGGTACCTTC CACGGGTTAG CGCATCGTCT GTTACGCACT
CACTTCCAAG ATGCGGGATT GCCGCAGAGC TTCCAAATTC TCGATTCGGA CGATCAGGTG
CGCTTGCTGA AACGCATCCT TAAAAGTTTG AATCTGGATG AAAAACAATA TCCCCCCCGT
CAGGCGCAGG CCTATATCAA TGGCAAGAAA GACCAAGGAT TACGGCCCAA GCATATCGAT
GCGGGTGGTT TTCCGATTGA GCAAAACCTG CTGAAGATTT ATCAGGTTTA TCAAGAGTCT
TGCGACCGCG CAGGCTTAGT CGACTTTGCC GAAATCCTGC TGCGTGCCCA CGAGCTGTGG
CTCAATAAAC CGCATCTGCT GGCGCATTAT CAGGAGCGTT TTAAGCATAT TCTGGTGGAC
GAGTTCCAAG ATACCAACGC CATTCAATAT GCTTGGATCC GCGTGTTGGC TGGCCAAACC
GCTAACGTGA TGATAGTGGG CGATGACGAC CAATCTATTT ACGGTTGGCG CGGCGCTCAG
GTTGAAAACC TGCACCGCTT CCTGCGGGAT TTCCCGACGG CTACTACGAT TCGCCTCGAG
CAAAATTATC GCTCCAAGGG CAATATTTTG AAGGCGTCGA ACGCCCTTAT CGCCAATAAC
CCCGAGCGTT TAGGTAAAGA GTTGTGGACC GACGAAGCCG ATGGTGAGCC GATTTCGCTC
TACTGCGCCT TTAACGAAAT GGACGAGGCG CGCTTTATTG TCGGCCGTAT CAATGATTGG
TACGAAAAAG GCGGCAATTT AAGTGACTGC GCGATTTTAT ATCGCTCAAA CGCTCAGTCG
CGTGTGCTCG AAGAAGCCTT ATTACACAAA GGTTTAGCCT ATCGTATTTA CGGTGGCCTG
CGCTTCTTCG AACGCCAAGA GATTAAAGAC GCTATGGGTT ATATGCGTCT TATCAGCAAT
AAAAATGACG ATGCCGCCTT CGAGCGCGTG GTTAATACAC CGCCCCGCGG CATTGGCGAT
CGCACCTTAG ATATTCTGCG TTCGACCGCC CGTCAGCAGG AACTCACCCT GTGGCAGGCT
TGTTTACGTT TGCTGGATGA AAAGGTGCTC GCAGGCCGCG CCGCCTCTGC GGTGCGTGGC
TTTATGGATC TTATCGTCAC CCTGCAGGAA GAAACTCAGG ACATGGCGCT GTACCGGATG
ACGGACACAG TGATCCAAGC CTCTGGGCTT AAGGCCATGT ACGAGGCGGA GAAAGGCGAA
AAGGCCCACG CCCGTATCGA AAACTTAGAG GAACTCGTTA CCGCGGCGCG CACCTTCGAA
ATGCCAGAGG AGCTTGAGGA TATGGGCGAG CTTAACGCCT TCCTATCCCA TGCGGCCCTA
GAGGCGGGCG AAGGTCAGGC CGATGCCTTT ACCGATGCCG TACAGTTAAT GACACTGCAC
TCGGCCAAGG GGCTGGAGTT TACTATGGTG TTTATGGCGG GTGTCGAGGA GGGCATTTTC
CCGAGTAAGA TGGCGCTCGA AGAGGGCGAT AGACTCGATG AGGAACGCCG CCTCTGTTAC
GTGGGCATGA CCCGCGCGAT GGAAAAACTC TATATCACCT ATGCCGAATC CCGTCGTATT
TATGGCCGCG AAGATTATGC CCGCCCATCG CGCTTTATTA AGGAAATTCC GCCGCAATAT
GTGGACGAAA TTCGCTTAAA GGCGCAGGTG TCGACGCCGA TGGCGAATAA TCGCTTCAGT
GCGCAAAAGT CGGCGGTCGC CAATGATACC GGCTTTAGCG TCGGCCAAAG AGTACATCAT
CCCAAGTTTG GTGACGGCAA AGTGACTAAC TTTGAAGGCA GTGGTGCGCA GGCGCGGGTG
CAGGTGAATT TTAGTGATTT TGGCAGTAAG TGGTTGGTGG TGGCCTACGC GCGTTTAGAG
GCGCGTTGA
|
|---|
| Protein sequence | MDVSSLLDGL NDKQREAVAA PQSSMLVLAG AGSGKTRVLT HRIAWLMQVE QQSPYSILAV
TFTNKAAAEM RERVEKVAGT NMGRMWIGTF HGLAHRLLRT HFQDAGLPQS FQILDSDDQV
RLLKRILKSL NLDEKQYPPR QAQAYINGKK DQGLRPKHID AGGFPIEQNL LKIYQVYQES
CDRAGLVDFA EILLRAHELW LNKPHLLAHY QERFKHILVD EFQDTNAIQY AWIRVLAGQT
ANVMIVGDDD QSIYGWRGAQ VENLHRFLRD FPTATTIRLE QNYRSKGNIL KASNALIANN
PERLGKELWT DEADGEPISL YCAFNEMDEA RFIVGRINDW YEKGGNLSDC AILYRSNAQS
RVLEEALLHK GLAYRIYGGL RFFERQEIKD AMGYMRLISN KNDDAAFERV VNTPPRGIGD
RTLDILRSTA RQQELTLWQA CLRLLDEKVL AGRAASAVRG FMDLIVTLQE ETQDMALYRM
TDTVIQASGL KAMYEAEKGE KAHARIENLE ELVTAARTFE MPEELEDMGE LNAFLSHAAL
EAGEGQADAF TDAVQLMTLH SAKGLEFTMV FMAGVEEGIF PSKMALEEGD RLDEERRLCY
VGMTRAMEKL YITYAESRRI YGREDYARPS RFIKEIPPQY VDEIRLKAQV STPMANNRFS
AQKSAVANDT GFSVGQRVHH PKFGDGKVTN FEGSGAQARV QVNFSDFGSK WLVVAYARLE
AR
|
|---|
| |