| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0456 |
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| Symbol | |
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| ID | 4476685 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 530394 |
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| End bp | 532427 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 639724991 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_868104 |
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| Protein GI | 117918912 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGATT CCGAACAAGG ACTAGGCGCT AAGACCAGTG ACTGGCCCAA GGCACTGTTT
TATACGGCGC TAGTTTTCTC CATTTTTCAA ATCATTACCG CCGCCTTTCA TCCCGTATCG
ACCCAAGTAT TGCGGGCAAC CCATGTGGGC TTTTTACTGT TAATCGTATT TTTAAGTTAT
CCGGCGGTGG GTAAGTCTCG CCCTTGGCAA CCCTTAGGCT GGGTGCTTGG CCTTGCGGGC
ATGGCAACAG CCGCCTACCA ATGGTTTTTT GAGGCCGACC TGATCCAGCG CTCCGGTGAA
CTCACCGATG CCGATATGGT GATAGGCGTA GTGTTGATTG TTTTAGTGTT TGAAGCCGCG
CGGCGGGTGA TGGGCTGGGC ACTGCCAATT ATCTGCTGTA TTTTCTTGGC CTACGGCTTA
TTCGGCCAAT ATCTCCCCGG TGACTTAATG CACCGTGGCT ACGGCGTTGA CCAAATTATC
AATCAGTTAT CCTTCGGTAC CGAAGGGCTC TACGGCACAC CAACCTATGT GTCGGCCACC
TATATCTTTC TGTTTATCTT GTTTGGCGCC TTTTTAGAGC AGGCGGGGAT GATCCGTCTG
TTTACCGATT TTGCGATGGG ATTATTCGGC CATAAACTCG GCGGCCCGGC GAAAGTGGCC
GTGGTTTCCT CGGCGATGAT GGGCACAATC ACAGGCTCAG GAGTAGCCAA CGTGGTGACC
ACGGGGCAAT TTACCATTCC CTTGATGAAA CGCTTTGGCT ACCGCCCCGC CTTTGCTGGC
GGTGTAGAAG CCACCTCCAG TATGGGTAGC CAGATTATGC CACCCATCAT GGGCGCGGTG
GCCTTTATCA TGGCCGAAAC CATTAACGTG CCGTTTATTG AAATCGCCAA AGCGGCGTTA
ATCCCCGCAT TATTGTATTT CAGCTCAGTG TTCTGGATGG TGCATCTGGA GGCAAAACGC
GCCAATCTCT GCGGCTTACC CAAGGATCAA TGTCCCGATC CCTGGGCGGC AGTGAAGGAG
CGCTGGTATC TGCTGATCCC GCTGTTTATT TTGATTTACT TGCTGTTTTC GGGTCGTACG
CCGCTGTTCT CTGGCATGGT CGGTTTAGCA CTGACCTCGA TAGTGATCTT AGGCTCTGCG
ATTGTGCTGC GCCTGCCTTC TAATGCCATG CGCTTCGCCT TTTGGATCGC CCTTGGGGTG
TTGTGTGCTG GCTTCTTCCA GATGGGTATC GCCGTCGTCT TTGGGGTTAT CGCCTTACTG
GTTGCTGTCT GCTGGTTTAT CAAAGGGGGC AAAGATACCC TGACCATCTG CCTACACGCC
TTAGTCGATG GCGCTCGCCA TGCGGTGCCT GTGGGGATAG CCTGCGCCCT GGTTGGGGTG
ATTATCGGTA TCGTCTCGCT GACGGGCATT GCCTCAACCT TCGCCAGTTA CATCCTCGCA
GTGGGTCAAG ATAACCTCTT CCTCTCGCTG GTGTTAACTA TGCTGACTTG TATGGTGTTA
GGTATGGGGA TCCCGAGTAT TCCTAACTAC ATCATTACCA GCTCGATTGC CGCACCTGCC
CTGCTGGACT TAGGTGTACC GCTGATCGTC TCCCATATGT TTGTGTTTTA CTTTGGGATT
ATGGCCGACC TCACGCCTCC CGTCGCCTTG GCCTGCTTTG CCGCAGCGCC AATAGCAAAA
GAATCGGGGC TAAAGATCAG TCTATGGGCG ATTCGCATCG CCATCGCAGG CTTTGTGATC
CCCTTTATGG CGGTTTACGA ACCAGCGCTT ATGCTACAAA GTGATAGCTG GCTTGCCATC
GGCTTTGTGA TGTTAAAAGC CACCGTAGGC ATAGGTATCT GGGGCGTGAT CTTCACCGGT
TTCTTACTGC AAAAACTCTA TTGGTGGGAA CGCGTTATCG GCTTCCTCGC AGGAGCCAGT
TTAATCCTTG CGACACCGCT CAGTGATGAA ATCGGTTTTG GACTGGCGCT ACTCTTTATC
GTGCAGCACA GCCTAAGAGT GCGCAAACTG AAACGTCTTG CGGAGCAGGG GTAA
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| Protein sequence | MSDSEQGLGA KTSDWPKALF YTALVFSIFQ IITAAFHPVS TQVLRATHVG FLLLIVFLSY
PAVGKSRPWQ PLGWVLGLAG MATAAYQWFF EADLIQRSGE LTDADMVIGV VLIVLVFEAA
RRVMGWALPI ICCIFLAYGL FGQYLPGDLM HRGYGVDQII NQLSFGTEGL YGTPTYVSAT
YIFLFILFGA FLEQAGMIRL FTDFAMGLFG HKLGGPAKVA VVSSAMMGTI TGSGVANVVT
TGQFTIPLMK RFGYRPAFAG GVEATSSMGS QIMPPIMGAV AFIMAETINV PFIEIAKAAL
IPALLYFSSV FWMVHLEAKR ANLCGLPKDQ CPDPWAAVKE RWYLLIPLFI LIYLLFSGRT
PLFSGMVGLA LTSIVILGSA IVLRLPSNAM RFAFWIALGV LCAGFFQMGI AVVFGVIALL
VAVCWFIKGG KDTLTICLHA LVDGARHAVP VGIACALVGV IIGIVSLTGI ASTFASYILA
VGQDNLFLSL VLTMLTCMVL GMGIPSIPNY IITSSIAAPA LLDLGVPLIV SHMFVFYFGI
MADLTPPVAL ACFAAAPIAK ESGLKISLWA IRIAIAGFVI PFMAVYEPAL MLQSDSWLAI
GFVMLKATVG IGIWGVIFTG FLLQKLYWWE RVIGFLAGAS LILATPLSDE IGFGLALLFI
VQHSLRVRKL KRLAEQG
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