| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0454 |
|---|
| Symbol | |
|---|
| ID | 4476683 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 528926 |
|---|
| End bp | 529912 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 639724989 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_868102 |
|---|
| Protein GI | 117918910 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.592921 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGTAGCGG ATTCTGCAGC ACAAATAAAG CAACTTCAGG CCGAAATCGC CGAGCTTAAA
CGTGAAAATG CGCGGTTAAC GGCGCTCAAT AATCGCGCCG AAGAAAAACT CTTTGCCGCC
CTCGATGGCA ATGGCTTGTG TTTGTGGGAG CAGCATGTTC CCAGTGGCAA TCTCACCCTG
TTCAATGTGA AGTGGGGCGA ACTGCTCGGC TTTAGCCGCG AGGAGCTTCG TGCCCATGTC
GACAGTTGGA AAAGTAAACT TCATCCAGAG GATAAAGACT GGGTAATCAA AGCCTTTGAA
GACCATGTGA ATGGCAAGGC CGATTATTAT CAGGTCGTGC ACCGTATGCT GCACAAAGAT
GGCAGCATTA CTTGGGTGTC GGATCGTGGC CGCATTGTTG AGCGTTTACC TGATGGCACG
CCACTGCGGA TGATGGGCAG CCATATCGAT ATCACTCAAG AAAAGCGCTA CGAGCTGGAT
TTAGCCCGAC TAGCCCATAG CGATCCACTC ACCAACTTAA TGAACCGCCA AGCCATCGCC
AAGGCCTTCG ATGAGTTATT ACAACCCGGC CAGCGCGGGG CGTTATTCTT TATCGATCTT
GATGGTTTTA AAGCCTTAAA TGATCACCAT GGCCACAAAT TTGGCGATAA CTTATTGGTG
CATGTGGCGC ATTCATTAGT AGAGCATTCG GGGGCGCAGG CAAAGATCGC GCGGCTCGGT
GGGGACGAGT TTGTGATTGT CCTGCTATCT TCGGATATAG AAGCCCTAGG CATGCTCGCG
CAATCCTTAC TGGATGTTTA TCGACAGCGT TTCTTGCTCG ATGGTTGTGA AGTGGCGATT
AGCTTGAGTA TCGGTATCGA TATTTTTGAG TACGGCGATC GTTTTACTCA AAGCTGCGAT
CGCGCCGATG CGGCTATGTA TCGTATTAAA CACCAAGGGA AAAACGGCTA CAGCTTCTCT
CGGAATGAGA GCAGTATTAA CCGCTAA
|
|---|
| Protein sequence | MVADSAAQIK QLQAEIAELK RENARLTALN NRAEEKLFAA LDGNGLCLWE QHVPSGNLTL
FNVKWGELLG FSREELRAHV DSWKSKLHPE DKDWVIKAFE DHVNGKADYY QVVHRMLHKD
GSITWVSDRG RIVERLPDGT PLRMMGSHID ITQEKRYELD LARLAHSDPL TNLMNRQAIA
KAFDELLQPG QRGALFFIDL DGFKALNDHH GHKFGDNLLV HVAHSLVEHS GAQAKIARLG
GDEFVIVLLS SDIEALGMLA QSLLDVYRQR FLLDGCEVAI SLSIGIDIFE YGDRFTQSCD
RADAAMYRIK HQGKNGYSFS RNESSINR
|
|---|
| |