| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0449 |
|---|
| Symbol | |
|---|
| ID | 4476678 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 524652 |
|---|
| End bp | 525695 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 639724985 |
|---|
| Product | diguanylate cyclase with GAF sensor |
|---|
| Protein accession | YP_868098 |
|---|
| Protein GI | 117918906 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAGAA GATTCAACCC TTTAGACTTA TCTGATAACG CTCAAGGACA TCAGATCTGC
CTTCCTGTCG AGTTTGTGCA AGCGCTCGCA GTGGCGAATT CACTTCAAGA AGTACTCGAT
ACCGTTTCCC AATGGCTCTA CCAACTGTTT GATGCTGAAA GGGCCAGCAT TACCTTGAGG
GACGACGCCG ACTTTCTCAA AATCTATTCC ATCCGGGGTA ACAAAGCGAT CCCGCTCGAT
TTCAGGGTAC CTATCGCCAA TACCCTTGTG GGTCGCGCCT TCACGGAAAA GACGGTACTC
ATCTGCGATG AATTAGATAA ATCCACCGAA CTGGACTGCA TCATGCTGGC GCAACACGGC
ATGCAAACCT GTATGGATGC ACCGCTGCTT TATGGCGATG TCTGCCTAGG CACGCTCAAT
GTCGCCCATA AGAAATCATC TTATTACAGT GAGTTACATG CCATAGAGTT GCAATGCTTA
GCCAATTGGA TTGGGCTTAA TATTAGCCTG CGACTACAAC TGAAAGAACT CGAATACCTT
GCCTCAACGG ATCATTTAAC AGGCGCGGCA AATCGACGGG TGTTTACCCA AAAAATTCGC
CAAGCCATGA CTGAGTTCCA TGAAAATGGC CAGTCGTTTT TCTTTGGCTT GATGGATATT
GACCATTTTA AGATGTTGAA TGACCAATTT GGTCATAGTG CAGGCGACTA TGTGTTGCAG
CGTATCGTCG CCATTTCCGA AACTATGATG ACCAGTCCGG GGAAATTCTT TCGCATTGGT
GGTGAGGAGT TTGCGATTAT CTTCCCCGAG CAAAGCGAGT ATGAGCCCTT GCGGTTTTTT
AACGATATCA GGGAAGCGAT CGCCCTTGCC GCGATGGATT ACGATGGCAT ACCAATCAGT
GTTAGCGTGA GCATTGGGTT TACCGCAATG CACATTCATG ACAACACCCC AGAATCCTTG
CTGAGGCGCT CGGATAAGGC GCTCTACCAA GCCAAACTCG CTGGCAGAAA TCGCGTGCTC
ATGTTTAACA GTGCGCAGGC ATAA
|
|---|
| Protein sequence | MERRFNPLDL SDNAQGHQIC LPVEFVQALA VANSLQEVLD TVSQWLYQLF DAERASITLR
DDADFLKIYS IRGNKAIPLD FRVPIANTLV GRAFTEKTVL ICDELDKSTE LDCIMLAQHG
MQTCMDAPLL YGDVCLGTLN VAHKKSSYYS ELHAIELQCL ANWIGLNISL RLQLKELEYL
ASTDHLTGAA NRRVFTQKIR QAMTEFHENG QSFFFGLMDI DHFKMLNDQF GHSAGDYVLQ
RIVAISETMM TSPGKFFRIG GEEFAIIFPE QSEYEPLRFF NDIREAIALA AMDYDGIPIS
VSVSIGFTAM HIHDNTPESL LRRSDKALYQ AKLAGRNRVL MFNSAQA
|
|---|
| |