| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0436 |
|---|
| Symbol | |
|---|
| ID | 4479343 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | + |
|---|
| Start bp | 507146 |
|---|
| End bp | 509716 |
|---|
| Gene Length | 2571 bp |
|---|
| Protein Length | 856 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 639724972 |
|---|
| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
|---|
| Protein accession | YP_868085 |
|---|
| Protein GI | 117918893 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCATAG GCAACAAAAT ATTGGTATTT ATTGCGGGGT TTTGTCTGCC TGCGGTTGTG
CTTGTGTCCT ATTGCCTCGG TTATTGGTTC GACCATAGGG TCGAGCAGTT GCGCCAAAAC
AATGTGCAGC ATGAGCTGAA CAATGTTCAA CAACAGTTTC ATATCGATCT CGACCGCTTA
AGTTTCCTGA CTAATATCTA CGCTTCGCCT CTGTCTCGGG TCGATGGCGA TCTGCTAGAG
TCAATCGAAT CATCATGGCG TGAGAGTGCC ATATCCGCCA ATTTGCATTG GTTTATTCTG
CAAGGCGGAC AACTGCAAAG TGTCCTCGCC AATTCCTCCA GCATTGCCTT GCCAACACAA
CAGGAAATAG CCCGCGCGGT ACTTGCCGCC GATAAACCTC AGCTTGCAGG AGCTTATCTT
GCAGGGAATG TTGGGCTCGT TGTTACCGCG GTTGCGGTTG CCCCCGAAGA ATACGTGCTC
TTGGTGCGCC AGTTATCGGC ACAAGACTTA CTAGAATATG CCCAGGTGCC ATTAGTTACT
CAGGTACAAA TGAGCAGCAG CAATCTGGCA ACAGCAAAGG ATTATGTCGG GTTCGTCCCA
ATCCCGAGTT TGCTGAATAA CATTCCCTTG TATTTGCAGG TGCAGTTTTC AACCGAACCT
TTCCAAGAGG TAAAGCTCGA CCTCGATTGG GTTTCGGTGG GGATTATTCT ACTCGGCGTG
TTAATTGTGG CGCTGGGGTA CATTTGGCTG CGCGCAGGCC TATTAAAGCC CTTTAAGAGC
ATGATGAAGC AGTTGGCATT GGTCGACCCT ACGGCCAGCG TGTATCGCCC TGTGAGTGGC
GAAGGCAACG CCGAGTTAGA AGTGTTGGCC AGCCGAGTGA ACAGCTTACT TGCTCGCATT
TATCAGCAGA AAGAACGTGG TAAGACGACT TTGGAGTCGA TTGCCGAGGC GGTGATCCTG
ACTGATATCG ATGCCAAGGT GATCTACATG AATCCCAAGG CCGAGTCCTT ACTCGATGTC
GCCAGTTGTT ACGCTGTGGG TCAGAGCCTA GCGTCGTTAT TAAAAGCGGG GGAGCAGTTA
AATCAAGCGG TATTCCACTG TATGCGCTTA GGGGAGACCA CGCCGCAAGT CGCCAAAATC
AAACTTTTAA CCGCAACGCC ACGGGTTATT GAGCGCAGCA TCAGTAACGT GTTGAATCAT
GATAAAGAAA TTACTGGTAC TGTGGTGGTG CTGCGGGATA TCACCCAAGA AGAATTGCTT
AAGCGTCAGC TGCAAAAACG CGCGAATTTC GATGGCATTA CTGGCTTATT GAATCGCCAA
GCCTTTGAAG AGCAGTTACC GCAGTTTGCC AGTCAGGCTA AGCGCATCGC GGTATGTTAT
CTGGATTTAG AACAGTTTAA GTTGATTAAC GATAGCTGTG GTCATACAGC CGGTGATCGC
ATGTTGGTCT TAGTAGCGCG GGCGATTCAA TCTTGTCTCG GGCCACAGAC CTTGTTAGCC
CGCCTCGGGG GCGATGAATT TGGCTTAGTG ATCTGCGATA GCACGGCTTT ATCTGTGGCG
CAGCAGTTAA AACAGATCAT TGCTCAGGTT TCGCTGCAGG TGTTGCACGA TAAAAACTGT
AACTATAAGG TCGGTTTGAG TATCGGTGTT GCCTTTGGCC GTGCGCCTTA TATCAATGCC
TTGGAGCTGC TCAAGGATGC GGATATTGCC TGTATCGCCG CTAAAGCTAA GGGCACAAAC
CAAATCCATT TTTACGATGA TAAAGATAAA GAGCTGACTT ATCAGCGTAA CGCACCAAAA
TGGGCGGTGC GTATCGCGCA AGCGATTGAG GAAAACGAAC TGCTGCTCTA CTACCAACCG
ATCCGCGGTT TAGGGGCGAG TTCCAAACGG CAACGGATGG AAATTCTGCT GAGGATCCAA
GAGCCATGCG GTCGTATTTT AGCGCCAGCG CAGTTTATTG CGGCGGCGGA GCGCTTTAAG
CTGATGCCAG AAATCGATAA AGAGGTGATA CGTAAAGCCT TTTTATGGCT GTCGTTAAAT
CCACAGCTGT GGCCGGATCA CTGTATTTCA ATCAACCTTT CAGGCAATAG TCTAGGCGCC
GAAGGCATGG TGGAATACAT AGCTCAGCAG CAACATATTT TTGATATTCC GAGCCAATGT
GTCTGCTTTG AAATCACCGA GACTACGGCG ATTCAAAACC GTCAGCGTGG CATGGAAATG
CTCAGGCAGC TGCGTAAACT CGGGTTTTCC TTCGCATTGG ATGATTTCGG CAGTGGCTTT
GCATCCTACG GTTATCTGCG TGAACTACCG GTGGACTATG TCAAAATCGA CGGTTGTTTT
GTGAAGAATT TAGCTGTCAA CGCCAAGGAT TACGCTATCG TTAAATCTAT TCAAGATGTT
TGCCGCGTAA TGGGGATTGA GACGGTTGCC GAGTTTGTCG AAAACCAAGA GATTATCGAT
AGATTACAAG TGATTGGTAT TAACTACGCT CAAGGCTATG CAATCGGACG ACCGCAACCT
TTGGCCAGTT ATTGCCAGCA GTTTGATATG CAGGCGGCAC AACGCGCCTA G
|
|---|
| Protein sequence | MRIGNKILVF IAGFCLPAVV LVSYCLGYWF DHRVEQLRQN NVQHELNNVQ QQFHIDLDRL
SFLTNIYASP LSRVDGDLLE SIESSWRESA ISANLHWFIL QGGQLQSVLA NSSSIALPTQ
QEIARAVLAA DKPQLAGAYL AGNVGLVVTA VAVAPEEYVL LVRQLSAQDL LEYAQVPLVT
QVQMSSSNLA TAKDYVGFVP IPSLLNNIPL YLQVQFSTEP FQEVKLDLDW VSVGIILLGV
LIVALGYIWL RAGLLKPFKS MMKQLALVDP TASVYRPVSG EGNAELEVLA SRVNSLLARI
YQQKERGKTT LESIAEAVIL TDIDAKVIYM NPKAESLLDV ASCYAVGQSL ASLLKAGEQL
NQAVFHCMRL GETTPQVAKI KLLTATPRVI ERSISNVLNH DKEITGTVVV LRDITQEELL
KRQLQKRANF DGITGLLNRQ AFEEQLPQFA SQAKRIAVCY LDLEQFKLIN DSCGHTAGDR
MLVLVARAIQ SCLGPQTLLA RLGGDEFGLV ICDSTALSVA QQLKQIIAQV SLQVLHDKNC
NYKVGLSIGV AFGRAPYINA LELLKDADIA CIAAKAKGTN QIHFYDDKDK ELTYQRNAPK
WAVRIAQAIE ENELLLYYQP IRGLGASSKR QRMEILLRIQ EPCGRILAPA QFIAAAERFK
LMPEIDKEVI RKAFLWLSLN PQLWPDHCIS INLSGNSLGA EGMVEYIAQQ QHIFDIPSQC
VCFEITETTA IQNRQRGMEM LRQLRKLGFS FALDDFGSGF ASYGYLRELP VDYVKIDGCF
VKNLAVNAKD YAIVKSIQDV CRVMGIETVA EFVENQEIID RLQVIGINYA QGYAIGRPQP
LASYCQQFDM QAAQRA
|
|---|
| |