Gene Shewana3_0428 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0428 
Symbol 
ID4479335 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp490091 
End bp491518 
Gene Length1428 bp 
Protein Length475 aa 
Translation table11 
GC content49% 
IMG OID639724964 
Productdihydrolipoamide dehydrogenase 
Protein accessionYP_868077 
Protein GI117918885 
COG category[C] Energy production and conversion 
COG ID[COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes 
TIGRFAM ID[TIGR01350] dihydrolipoamide dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00251394 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.166632 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTAACG AAATCAAAAC TCAGGTAGTG GTATTAGGTG CAGGTCCTGC TGGATATTCT 
GCTGCCTTCC GTGCGGCTGA CTTAGGTCTG GAAACCGTTA TCGTTGAACG TTTTAGCACT
TTAGGTGGCG TGTGTCTGAA CGTGGGTTGT ATCCCATCTA AAGCCCTGTT ACACGTTGCT
AAAGTTATCG AAGAAGCCAA AGCCGTTGCT GCACACGGTG TTGTGTTCGG CGAGCCAACA
ATCGATTTAG ACAAGTTACG CAGCTTCAAG CAAAAAGTGA TCAGCCAGTT GACTGGTGGC
TTAGGCGGCA TGTCTAAAAT GCGTAAAGTA AACGTTGTTA ATGGCTTCGG TAAATTTACT
GGCCCTAACA GCTTAGAAGT GACTGCTGAA GACGGTACTG TGACCGTTGT TAAGTTTGAC
CAAGCGATTA TCGCTGCGGG TTCTCGCCCA ATCAAACTGC CATTCATTCC CCATGAAGAC
CCACGTATTT GGGATTCGAC CGACGCATTA GAACTGAAAG AAGTGCCTGG CAAACTGCTG
GTCATGGGCG GCGGTATCAT CGGTTTAGAA ATGGGTACGG TTTACTCTTC TCTGGGCAGT
GAAATCGACG TGGTTGAAAT GTTCGACCAA GTGATTCCAG CGGCTGACAA AGACGTTGTT
CGCGTATTCA CTAAGCAAAT CAAGAAGAAA TTCAACCTGA TCCTCGAAAC CAAAGTGACT
GCGGTTGAAG CCCGTGAAGA CGGTATCTAC GTTTCGATGG AAGGTAAGAG CGCACCAACT
GAGCCAGTAC GTTACGATGC AGTGTTAGTG GCTATCGGTC GTACGCCAAA TGGCAAGCTG
ATCGACGCTG AAAAAGCAGG CGTTAAGATC GACGAGCGTG GTTTCATCAA CGTAGACAAG
CAATTACGTA CAAACGTACC GCACATCTAC GCTATCGGTG ACATCGTTGG TCAACCAATG
CTCGCTCACA AAGGCGTGCA CGAAGGCCAC GTAGCGGCCG AAGTGATCGC TGGCATGAAG
CACTACTTCG ATCCAAAAGT CATCCCATCA ATCGCTTACA CAGACCCTGA AGTGGCCTGG
GTTGGTCTGA CTGAGAAAGA AGCGAAAGAG CAAGGTATTG CTTACGAAAC AGCGACTTTC
CCATGGGCTG CCTCTGGCCG TGCTATCGCT TCTGATTGCA GCGAAGGTAT GACTAAGCTG
ATTTTCGATA AAGACACTCA CCGCGTAATC GGTGGTGCTA TCGTGGGTGT GAACGGTGGC
GAACTGTTAG GCGAAATCGG CCTAGCAATC GAAATGGGTT GTGATGCTGA AGATTTAGCA
TTAACTATCC ATGCTCACCC AACGCTGCAC GAGTCAGTAG GTCTAGCGGC TGAAATCTAC
GAAGGTTCTA TTACAGACCT GCCAAACCCA AAGGCAAAGA AAAAGTAA
 
Protein sequence
MSNEIKTQVV VLGAGPAGYS AAFRAADLGL ETVIVERFST LGGVCLNVGC IPSKALLHVA 
KVIEEAKAVA AHGVVFGEPT IDLDKLRSFK QKVISQLTGG LGGMSKMRKV NVVNGFGKFT
GPNSLEVTAE DGTVTVVKFD QAIIAAGSRP IKLPFIPHED PRIWDSTDAL ELKEVPGKLL
VMGGGIIGLE MGTVYSSLGS EIDVVEMFDQ VIPAADKDVV RVFTKQIKKK FNLILETKVT
AVEAREDGIY VSMEGKSAPT EPVRYDAVLV AIGRTPNGKL IDAEKAGVKI DERGFINVDK
QLRTNVPHIY AIGDIVGQPM LAHKGVHEGH VAAEVIAGMK HYFDPKVIPS IAYTDPEVAW
VGLTEKEAKE QGIAYETATF PWAASGRAIA SDCSEGMTKL IFDKDTHRVI GGAIVGVNGG
ELLGEIGLAI EMGCDAEDLA LTIHAHPTLH ESVGLAAEIY EGSITDLPNP KAKKK