Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_0425 |
Symbol | pdhR |
ID | 4479332 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | + |
Start bp | 484423 |
End bp | 485175 |
Gene Length | 753 bp |
Protein Length | 250 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 639724961 |
Product | transcriptional regulator PdhR |
Protein accession | YP_868074 |
Protein GI | 117918882 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.113174 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0306695 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCTATA GTAAAATTAA TCAGCCAAAA ATTTCTGATG TGATCATGGC GCAACTCGAG CAGATGATCC TCGAAGGCAG TTTACAGCCG GGTCAGAAAT TACCGCCGGA GCGCGAACTG GCCATCCAGT TTGAAGTGTC TCGCCCTTCC TTGCGTGAAG CCATTCAAAA GCTTGAGGCG AAAGGGCTAT TAATGCGCCG TCAAGGCGGT GGCACTTATG TCAAAGAACA ACTCTGGCAG AGTCTTGCCG ATCCTATCGT TGAATTAATG ACTGCCGATC CAGAAAGCCA ATACGACTTG CTGGAATTTC GTCATGCGAC CGAAGGCATG ATGGCCTATT TTGCCGCGTT GCGTGGCACA GACGCCGATA TGCAAAATAT CAAGCGTATG ATCCTTGAGG TGGAAGCCGC CACCAATATC GAACAACAAG CCGCTGCCAT TGTGCGTTTT TACCGCGCAG TAGCTGAAGC GTCACACAAT GTGGCTATGT TGCATCTCGT ACTCAGTTTA ACCCCTGTGC TGCATAAGAA TGTGGCGCAA AACTTGGAGC TTTTAAGCCG CCGCGAAGAA GCCTCCACTA TGGCCAACGA TCACAGACGT GCTCTGCTCG CTGCTATCGT TCGTCGTGAT CCTGAAGCCG CCAGAGAAGC CTCGAATGAA CACTTAAGTT ACATCGAAGA GGTGATGTTA TCTGTGCGGG AAGAAGATAG CCGGTTGCAG CGAAGTTTGC GCCGTTTAAA GAGTGGCGCT TAA
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Protein sequence | MAYSKINQPK ISDVIMAQLE QMILEGSLQP GQKLPPEREL AIQFEVSRPS LREAIQKLEA KGLLMRRQGG GTYVKEQLWQ SLADPIVELM TADPESQYDL LEFRHATEGM MAYFAALRGT DADMQNIKRM ILEVEAATNI EQQAAAIVRF YRAVAEASHN VAMLHLVLSL TPVLHKNVAQ NLELLSRREE ASTMANDHRR ALLAAIVRRD PEAAREASNE HLSYIEEVML SVREEDSRLQ RSLRRLKSGA
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