Gene Shewana3_0420 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0420 
Symbol 
ID4479327 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp478842 
End bp480278 
Gene Length1437 bp 
Protein Length478 aa 
Translation table11 
GC content41% 
IMG OID639724956 
ProductO-antigen polymerase 
Protein accessionYP_868069 
Protein GI117918877 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000329147 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.0182315 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAATAT TGAAATCAAT CCCGATTGTT AGTCGGATTA TCCTGCTCAC TTTCTTCGCG 
CTATTTTTTC TTGGCTCGGT ATTATCAGGT TATATCACTG GATATCTGGG GGTGGATAAC
GCTTACGATC TTAAGCGAAT CCTAGTAATT ATATTTATCG TGTGTTCAGC GGTTGGCCTT
TTGTGGCGAC CGAGTATTCC AATAATCGTC ACATCGCCTT TTACACTGTG GGTGGTGGCA
AGCCTATTTA TACTCGGTTT GATATCAACC ATTTTTAGCC AGCATCCATT TTGGTCATTC
GTTGAGTTAG CTAATTTTTT ATTATTGCTC TGTTTGTTTT ACGTCATTGG TGTATTGATT
GCGGATATAG GCAGAACTGC TGCGCTGCAA TACTTTTTTG GGTTTGCATT ATTTTTCTCG
ATTTGTATTG CAGTTAAGTT TTTCTTGCTG CTGCTATTTC ATGCCCTTGA TAACAATCGG
CCCGATGTGC ATTCTTTAGT GGCTGACTTT ATGAATGTAA GGTTTTTCAA CCAGTTGCAA
GTTGCGCTGC TGCCGCTGTT GTGTTTGTCT TTTTATATCG AACCACTTAA AAAATATAAA
CGAGTAGCCA TGGTGACCTT TAGTGTGTTG TGGTTAATCC TGCTGCAATC GGAGGCTCGC
GGAGCATTAT TAGCGCTGCT AGTGGCGGCT ATTGTGGTGT ATCGCTTTTT GCCCGCCAGC
TTTGGTAAAG CATTTATTCG CCCCATTATG AAGGCGGTGG CTTTCGGCAC GCTTTTATGG
CTGGTGCTGA TCATTATCAT TCCACTGTTT ATTTTTGATA GCCCAATTTG GCAATTAAGA
ACCAATAGCT CTGGCCGGAT TGATATGTGG ATTTATATTT TGCATGCGAT CCCTGAACAT
ATTGGCTTAG GTTACGGGCC AATGAGTTTT GCATGGGCAG AAGCAAGACC TTTACCTAAT
GCTCACCCAC ATAATGCCCT CATGCAGTTT TTATATGAGT TTGGTGTGGT TGCGTTTATC
TTACTGGCGA GTTGGTCGCT AATAACATTA TGGTCAATAT TAAAAAGACT TAAATTATTA
GGGGCAAAGT CGAGTGAGCA TTTGGCTAAA AACTCACAAT GTAGCCTCGA CACCAGCTCA
CATATAGTCA TAGAGACGGA CACTACCGAT ATAGTGTTGG CATTTGCCCT ATGCGCAATA
TGGATTTATG CCATGTTTGA TGGGGTGATT GTAATGCCAT TATCCCAAGC ATTATTGGTG
GCATTATTGG CACTTAATTG CCGTCACTAT CAATCGCGAG TAATAACACT GCCATTAAAA
GTTGCGTTAG TGGCAATATT AATAACCTGT GGTGCATTGT TAATCGTTAG CCTCGGTGAT
ACCGCGCTTA ATCAGCAACT TTATCCAAGA TTATGGTTAA CTGGGATAAT TAATTGA
 
Protein sequence
MQILKSIPIV SRIILLTFFA LFFLGSVLSG YITGYLGVDN AYDLKRILVI IFIVCSAVGL 
LWRPSIPIIV TSPFTLWVVA SLFILGLIST IFSQHPFWSF VELANFLLLL CLFYVIGVLI
ADIGRTAALQ YFFGFALFFS ICIAVKFFLL LLFHALDNNR PDVHSLVADF MNVRFFNQLQ
VALLPLLCLS FYIEPLKKYK RVAMVTFSVL WLILLQSEAR GALLALLVAA IVVYRFLPAS
FGKAFIRPIM KAVAFGTLLW LVLIIIIPLF IFDSPIWQLR TNSSGRIDMW IYILHAIPEH
IGLGYGPMSF AWAEARPLPN AHPHNALMQF LYEFGVVAFI LLASWSLITL WSILKRLKLL
GAKSSEHLAK NSQCSLDTSS HIVIETDTTD IVLAFALCAI WIYAMFDGVI VMPLSQALLV
ALLALNCRHY QSRVITLPLK VALVAILITC GALLIVSLGD TALNQQLYPR LWLTGIIN