| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0419 |
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| Symbol | |
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| ID | 4479326 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 476825 |
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| End bp | 478534 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 639724955 |
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| Product | type IV-A pilus assembly ATPase PilB |
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| Protein accession | YP_868068 |
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| Protein GI | 117918876 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.447977 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00974258 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCATCCG CTGGCCTTCA CCTGGGATTA TCCACCCTTT TCATCCGTAA AGGTCTGCTT
AATGAAGAGC AGATGGCGAG TGCCATCACT AAATCCCGCC AAAATAAACA AACCTTAGTC
ACTACCTTAG TGCAGACTAA GCTAGTGTCG GCTCGCAGTA TTGCCGAGCT TTGCTATGAG
GAATACGGCA CCCCGCTGCT GGATTTAGCC GAATTTGATG TTAGTGCCAT TCCCGAAGAG
TTTCTGAATA AAAAACTGAT TGAAAAGCAC CGCTGCTTAC CGCTATTTAA GCGCGGTAAT
CGCCTCTATA TCGCCACCTC TGACCCCACC AATATTGCCG CCCTTGAGGA ATTCCAATTT
AGTGCAGGCC TACATGCCGA AGCGATTTTG GTGGAAGAAG ATAAGCTCGC TAAAGCCCTT
GAAAAGGTAC TAGAAGAAGA TATTACTGGC CTTGATTTAA GCGGCATGGA TGAAGCAGCA
CTTGCCGGTA TCGAAGTTAC CGATACCGAT AAGCGCCAAG AAGAAAACGC AGGAGAAGCC
AGCGATGACG CCCCTATTGT TATTTATATC AATAAGATAT TAACCGATGC CATTCGTAAG
GGCGCCTCTG ACTTACATTT TGAGCCCTAT GAAAAACGCT ACCGTATCCG TTTTCGTATC
GATGGTATTT TGCATGAGGT CTCCGAACCG CCCATTAGTT TAGCAGGGCG ACTCTCGGCG
CGCTTAAAGG TAATGTCCAA GCTGGATATT GCCGAGCGCC GCGTCCCACA AGATGGGCGG
ATTAAAATGA AGCTATCCCG CACTAAGTCT ATCGACTTTC GGGTAAGTAC CCTGCCGACC
CTGTGGGGCG AGAAGATTGT AATGCGGATA TTAGATTCTT CTTCCGCCCA GCTTGGTATC
GAAAAACTCG GTTACGAACC CGATCAAGAA AAGCTTTACC TTGAAATGCT AGCCAAACCT
CAGGGCATGA TATTAGTGAC AGGCCCAACG GGTTCGGGTA AAACCGTTTC GCTCTACACA
GGCTTAAATA TCCTCAATAC CGCCGAGCGT AATATCTCCA CTGCCGAAGA TCCGGTGGAA
ATTAACCTTG AGGGGGTAAA CCAAGTCCAT ATTAATTTAA AAGCGGGTTT AACCTTTGCT
TCAGCACTAC GTTCGTTTTT GCGGCAAGAC CCCGATGTGG TGATGGTCGG GGAAATCCGT
GACCTTGAAA CCGCCGAAAT TGCCATTAAA GCCGCGCAAA CTGGCCACTT AGTATTATCA
ACCCTGCATA CTAACTCGGC GGCAGAAACG CTCACCCGTT TAATTAATAT GGGCGTACCC
GGCTATAATA TTGCCAGCTC AGTTAATTTA ATTATTGCTC AGCGCCTTGC ACGGCGGCTT
TGCACTGAAT GCAAACAAGC CGAACAGATA CCCGAACATG AGCTACAACG CTTAGGCTTT
ACCGATGAGC AAATCGCTCA AGGGTTTACC ACCTTTAAAC CTGTGGGTTG TGAACATTGT
TCTGGTGGCT ATAAAGGACG GGTAGGTATT TACGAAGTGA TGAAGATGTC AGATGAAATT
GCCCGTACTA TTATGGAAGG TGGCAATTCA TTGCAGATAG CAGATCAAGC CAAGGCTCAA
GGCATGCGCG ACCTGCGGCA ATCGGGCCTC CTAAAAGTCC TTCAAGGGGT AACTAGCATT
GCAGAAATCA ATAGGGTGAC AAGCTTTTAA
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| Protein sequence | MPSAGLHLGL STLFIRKGLL NEEQMASAIT KSRQNKQTLV TTLVQTKLVS ARSIAELCYE
EYGTPLLDLA EFDVSAIPEE FLNKKLIEKH RCLPLFKRGN RLYIATSDPT NIAALEEFQF
SAGLHAEAIL VEEDKLAKAL EKVLEEDITG LDLSGMDEAA LAGIEVTDTD KRQEENAGEA
SDDAPIVIYI NKILTDAIRK GASDLHFEPY EKRYRIRFRI DGILHEVSEP PISLAGRLSA
RLKVMSKLDI AERRVPQDGR IKMKLSRTKS IDFRVSTLPT LWGEKIVMRI LDSSSAQLGI
EKLGYEPDQE KLYLEMLAKP QGMILVTGPT GSGKTVSLYT GLNILNTAER NISTAEDPVE
INLEGVNQVH INLKAGLTFA SALRSFLRQD PDVVMVGEIR DLETAEIAIK AAQTGHLVLS
TLHTNSAAET LTRLINMGVP GYNIASSVNL IIAQRLARRL CTECKQAEQI PEHELQRLGF
TDEQIAQGFT TFKPVGCEHC SGGYKGRVGI YEVMKMSDEI ARTIMEGGNS LQIADQAKAQ
GMRDLRQSGL LKVLQGVTSI AEINRVTSF
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