| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0418 |
|---|
| Symbol | |
|---|
| ID | 4479325 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 475431 |
|---|
| End bp | 476702 |
|---|
| Gene Length | 1272 bp |
|---|
| Protein Length | 423 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 639724954 |
|---|
| Product | type II secretion system protein |
|---|
| Protein accession | YP_868067 |
|---|
| Protein GI | 117918875 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.11378 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.00766616 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCTACGG CAACTACTGT AAAAAAGCCT CGTGCCAAAA AGAGCGAGCA AAAAAGCCAA
CCCAAAATCT ATACCTTCGA ATGGAAAGGC CTTAATCGCG ACGGTCAGAA AACCAGTGGT
GAACTGAGGG GGGCCTCTGC GGCCGAAATT CGCAGCCAAC TCAAATCCCA AGGTGTAAAC
CCTAAAACCG TACGCAAGCA ATCAGCGGCC CTATTTAAGC TAGGTGACGC AAAAATTAGT
CCAATGGATA TTGCCATGAT TACACGGCAA ATTGCGACAA TGCTTGCTGC TGGCGTTCCC
TTAGTCACGA CTATTGAGTT ACTCGGTCGC GGTCATGAAA AAGCAAAAAT GCGTGAGCTA
TTAGGCTCCA TTCTTTCCGA AATCCAATCG GGTATTCCAC TATCAGACTC ACTACGCCCC
CATAGACGCT ATTTCGATGA TCTCTATGTT GATTTAGTAG CTGCGGGTGA ACACTCGGGA
TCTTTGGACG TAGTATTCGA CCGTATTGCG ACATACCGTG AAAAGTCTGA AGCATTGAAA
TCTAAGATAA AAAAAGCCAT GTTTTATCCG GCTGCAGTAG TCGTCGTAGC CATTTTAGTA
ACAACTCTAC TGTTACTCTT TGTTGTCCCG CAGTTTGAAG AGATTTTTAA AGGATTTGGC
GCGGAATTAC CTGCTTTTAC TCAGTTGGTG CTTCATATAT CCAGAGGCTT ACAATCCTCT
TGGTATATTT TTTTGGGAGC TATCGTAGCT GGAGTATTTT TGTTTGTTCG CGCCCATAGA
AACTCGCAAA TGGTTAGAGA TCGAGTGGAT GAAGCCGTAT TAAAAATTCC TGCAATTGGA
CCTATCTTGC ATAAAGGTGC AATGGCGCGT TTTGCTCGAA CCTTAGCCAC GACTTTTGCC
GCAGGGGTTC CGTTAATCGA TGGTTTAGAA TCTGCAGCTG GTGCATCAGG AAACGCTGTA
TATCGAAAAG CCATTTTGAA AATCCGTCAA GAGGTGATGG CCGGGATGCA AATGAACGTC
GCCATGCGTA CCACAGGGCT TTTCCCCGAT ATGTTGATCC AAATGGTGAT GATCGGTGAA
GAATCAGGTT CACTCGATAA TATGCTAAAC AAAGTAGCCA ATATTTATGA GATGCAGGTC
GATGATGCGG TTGATGGCTT ATCAAGCCTT ATCGAGCCCA TTATGATGGT GGTTATTGGC
ACGGTTGTTG GCGGCCTCAT TGTCGCTATG TACTTACCAA TCTTCCAAAT GGGTAAAGTT
GTAGGTGGTT AA
|
|---|
| Protein sequence | MATATTVKKP RAKKSEQKSQ PKIYTFEWKG LNRDGQKTSG ELRGASAAEI RSQLKSQGVN
PKTVRKQSAA LFKLGDAKIS PMDIAMITRQ IATMLAAGVP LVTTIELLGR GHEKAKMREL
LGSILSEIQS GIPLSDSLRP HRRYFDDLYV DLVAAGEHSG SLDVVFDRIA TYREKSEALK
SKIKKAMFYP AAVVVVAILV TTLLLLFVVP QFEEIFKGFG AELPAFTQLV LHISRGLQSS
WYIFLGAIVA GVFLFVRAHR NSQMVRDRVD EAVLKIPAIG PILHKGAMAR FARTLATTFA
AGVPLIDGLE SAAGASGNAV YRKAILKIRQ EVMAGMQMNV AMRTTGLFPD MLIQMVMIGE
ESGSLDNMLN KVANIYEMQV DDAVDGLSSL IEPIMMVVIG TVVGGLIVAM YLPIFQMGKV
VGG
|
|---|
| |