| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0379 |
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| Symbol | |
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| ID | 4478961 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. ANA-3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008577 |
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| Strand | - |
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| Start bp | 420327 |
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| End bp | 421742 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 639724915 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_868028 |
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| Protein GI | 117918836 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 55 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGACTT TAGTAAGACG ACAATTTCAA TGTTCAAAAA TAGCTGTGTT GTTATCAGCT
ATCTTGCTTC CACTATCAGC TCAAAGCCAA ACGTTAGAGC AAGCGGTTGC GCATACACTC
GATACCAACC CAGATCTACG TGTGGCTTTT AATCGCTTTA AAGCTAGAGA AGAGCAAGTG
AATCAAGCTA TTGCTGGTTA TATGCCTACA GTAGATATCA CTGGTGGTTA TGGCTATGAG
CAAACCGATA GTGTCTCAAC CCGCAGACGC AAAAATGTCG GCGATGTTGA TAGCAATGGT
GTTGCTGAGC TAAACCGTGG TGAATTTGGT ATTAGCCTTA AACAAATGCT ATTCGATGGT
TTTTATACCA GCAGTGAAGT TGACCGTTAT AGCTTTGAAG CCAGTGCAGA CCAGTGGGCG
CTTCTTGCCG CAGCAGAAGA CATGGCACTT GATGTCAGTA AGGTCTACCT CAACTATCTG
CGCACCGATG AGGTGCTCAA ATTGGCTGAG AAAAACCTCA ACAGCCACAA AGATATTTAT
GAGCAAATCA AACAACGTAC CGATTCAGGT TTAGGCTCGA CTGCGGATCT CTCACAAATT
ACCGGTCGTC TCGCCCGTGC CAATGCGAAC GTCATTTCTG CACGTAATAA TCTACTCGAT
GCCAAAGCAC AATTTATTCG TGTGATCGCG GCTGATCCTG TTGATTTGAT CCAACCCGTA
CCGGATGCAG ATTTACTGCC GAAAGATCTT AACTCGGGCC TTACCGACGC GCAGGAAAAC
CACCCGATTT TAAAATCCGC AGCCAATGAT ATTCGCGCCG CCGAGAACGA ACGTTCGTCG
GTGCAAGCAA GTTATTATCC ACAAGTCTCG TTAGAGTTAA ATGGTAACTG GAACAACGAT
GTGGGCGGTG AAGACGGCGT TAGCGCGTTA GCCAGCCAAA ACGTTGGCGG TTACAACAAC
GATCTGGTTG CTATGGTGAG AGTGAGATAC AACCTGTTCG CTGGCGGTAA AGATCTCGCC
CGCGAAAAAG AAACAGCCTA CAAGTTAGGT GAGGCCAAAG AAATCCGTCA ACGCGCGCAG
CGTGAAGTGG TTGAAGGCGT GAACTTAGCG TGGAACGCCT ATGAAATGCT GGCCCCACAG
AAACAATATA TCCGCGACCA TGTGATGGCT GCAAAAGATA CCCAATCTGC CTACGCCCAA
CAGTTTAACT TGGGTCAACG CAGTTTACTC GACTTACTCG ATACCGAAAA CGAGCTGTTT
GAGGCACGTA AAGATTACTT ACAAGCCGAA TACGATGAAA TCATTGCTAA ATATCGCGTA
CTCAACTCTA CTGGACGTTT GCTTGACTCC TTAAAAGTCA CTCGCCCAGA AGCATGGCGT
GGTGAACGCA ACTACGAGGG AGGAGCTAAC CAATGA
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| Protein sequence | MKTLVRRQFQ CSKIAVLLSA ILLPLSAQSQ TLEQAVAHTL DTNPDLRVAF NRFKAREEQV
NQAIAGYMPT VDITGGYGYE QTDSVSTRRR KNVGDVDSNG VAELNRGEFG ISLKQMLFDG
FYTSSEVDRY SFEASADQWA LLAAAEDMAL DVSKVYLNYL RTDEVLKLAE KNLNSHKDIY
EQIKQRTDSG LGSTADLSQI TGRLARANAN VISARNNLLD AKAQFIRVIA ADPVDLIQPV
PDADLLPKDL NSGLTDAQEN HPILKSAAND IRAAENERSS VQASYYPQVS LELNGNWNND
VGGEDGVSAL ASQNVGGYNN DLVAMVRVRY NLFAGGKDLA REKETAYKLG EAKEIRQRAQ
REVVEGVNLA WNAYEMLAPQ KQYIRDHVMA AKDTQSAYAQ QFNLGQRSLL DLLDTENELF
EARKDYLQAE YDEIIAKYRV LNSTGRLLDS LKVTRPEAWR GERNYEGGAN Q
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