Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewana3_0372 |
Symbol | |
ID | 4478950 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. ANA-3 |
Kingdom | Bacteria |
Replicon accession | NC_008577 |
Strand | - |
Start bp | 409534 |
End bp | 410652 |
Gene Length | 1119 bp |
Protein Length | 372 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 639724904 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_868021 |
Protein GI | 117918829 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAT GGACTCTAAG TATGCTAGCG ATCGCTGTAC TTGCCTTTGG CTCAGTGATC GGCTTTAACC TGATGGTAAA AAGTAAAATC GCCGAGGCAA TCGCCAATAT GCCAGAGGCT GAGTTTCCTG TAACAGCCAT GACATTAGAT ATGCAAAAGT GGCAACCCAC AATTGATGCG ATTGGCTTTG TTGAGCCGCA TCAAGGGGTA ACCATCTCCA ACGAATTAGC AGGACGCGTC ACCAGCATTA ATTTTGAAAA CGGTAGCCGA GTGGAAAAAG GCCAACTACT GGCCGAACTC GATGCAAAAG TCGAAAGAGC CAACCTTAAA AGCAAAATGG TACAACTGCC CGCCGCTGAA GCCGACTTTA AACGCCTATC AAAACTCTAT GCGCAAAAGT CAGTCTCTAA ACAGGATTTA GACAATAGTG AATCTAAATA TCTGGCCTTA CAGGCGGATA TTGAAAGCTT AAAAGCCACT ATCGAGCGCC GTGAAATCAG TGCGCCTTTC AGTGGTTTAG TGGGTATTCG TAACATTAAC TTAGGTGAAT ATCTTCAGCC TGGTACCGAT ATTGTGCGCC TTGAAGATAT CAGCACAATG AAAATCCGCT TTACCATTCC GCAAACCCAA TTACCTCGCA TTGCTGTAGG CCAAAAAATC CATGTGTTTG TGGATTCTTA TCCTGAGCAA CCCTTCGAAG GTGAAATTGC CGCGATTGAA CCCGCCGTGT TTTACCAAAG CGGTCTGATC CAAGTGCAAG CACGCATTCC GAACGATAAC GCCAAACTGC GTAGCGGTAT GTTTGCCCGA GTCTCCATCC TGTTACCTGA ACTAGATAAC CAGTTTGTAC TGCCACAAAC GGCCATCAAC TTTACCCTTT ATGGTAACTC TATTTACCTC ATCAAAGAGG TCGAGGAAAA CGGTAAAAAA CTGGCTAGAG TCGAGCAAAT CAACCTGACG GTATTAGAGC GTAACGGCAA TAACGCACTA GTGAGTGGCG CGTTAAAAGC GGGAGATCGC ATTGTCACCT CGGGGCAAAT TCGCCTCAGT AACAACAGTA AAGTGACAGT TGTTGAAGAC CAAGCCCTGA CCCACTCCGA CACTATGCCA AAGCTGTAA
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Protein sequence | MKKWTLSMLA IAVLAFGSVI GFNLMVKSKI AEAIANMPEA EFPVTAMTLD MQKWQPTIDA IGFVEPHQGV TISNELAGRV TSINFENGSR VEKGQLLAEL DAKVERANLK SKMVQLPAAE ADFKRLSKLY AQKSVSKQDL DNSESKYLAL QADIESLKAT IERREISAPF SGLVGIRNIN LGEYLQPGTD IVRLEDISTM KIRFTIPQTQ LPRIAVGQKI HVFVDSYPEQ PFEGEIAAIE PAVFYQSGLI QVQARIPNDN AKLRSGMFAR VSILLPELDN QFVLPQTAIN FTLYGNSIYL IKEVEENGKK LARVEQINLT VLERNGNNAL VSGALKAGDR IVTSGQIRLS NNSKVTVVED QALTHSDTMP KL
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