| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewana3_0258 |
|---|
| Symbol | |
|---|
| ID | 4479166 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. ANA-3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008577 |
|---|
| Strand | - |
|---|
| Start bp | 289031 |
|---|
| End bp | 290440 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 639724790 |
|---|
| Product | nitrogen metabolism transcriptional regulator, NtrC, Fis family |
|---|
| Protein accession | YP_867907 |
|---|
| Protein GI | 117918715 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | [TIGR01818] nitrogen regulation protein NR(I) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.1328 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.00000193209 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAC AAGTGTGGAT CCTCGACGAT GACAGTTCGA TACGTTGGGT GCTCGAAAAG
GCGCTCCAAG GCGCGAAACT CAGCACCGCC AGCTTTGCCG CGGCCGAATC ACTTTGGCAA
GCATTAGAGA TTTCCCAGCC ACGGGTCATA GTCTCAGATA TTCGCATGCC GGGCACAGAC
GGCTTAACCC TGTTAGAAAG GCTGCAAATC CACTACCCGC ATATTCCCGT CATCATCATG
ACTGCACATT CGGATTTAGA CAGTGCCGTC AGCGCCTATC AGGCGGGGGC ATTTGAGTAT
TTGCCCAAAC CCTTCGATAT TGATGAGGCG ATATCCTTAG TCGAGCGCGC CCTAACCCAT
GCGACCGAGC AAAGCCCCGC ACCTGCGGCG CAGGAGACGC AAGTCAAAAC CCCCGAAATC
ATAGGTGAAG CGCCCGCGAT GCAGGAGGTG TTTCGCGCCA TTGGCCGGTT ATCACGCTCC
TCAATCAGCG TGCTCATCAA CGGCCAATCG GGTACGGGTA AAGAGCTAGT CGCAGGTGCA
TTGCACAAAC ACAGCCCGCG CAAAGACAAG CCCTTTATCG CCTTGAATAT GGCGGCAATT
CCCAAAGATT TAATCGAATC GGAGCTCTTC GGCCATGAAA AAGGCGCCTT CACCGGCGCG
GCCAACGTGC GCCAAGGACG CTTCGAGCAA GCCAATGGCG GCACCCTGTT TTTAGATGAA
ATCGGCGATA TGCCGCTGGA CGTACAAACC CGTTTGCTGC GGGTACTCGC CGATGGACAA
TTTTATCGTG TCGGCGGCCA TAGCGCCGTC CAAGTGGATG TGCGCATTAT TGCTGCCACC
CACCAAGATC TGGAGCAACT CGTGCTCAAA GGGGGATTTA GGGAAGACCT ATTCCATCGG
CTCAATGTTA TCCGCGTCCA CTTGCCGCCG CTGTCACAAC GCCGTGAGGA TATTCCCCAA
CTGGCAACCC ACTTTCTAGC CTCCGCCGCT AAGGAGATTG GTGTCGAGGC AAAAATCCTC
ACCAAAGAGA CCGCCGCCAA GCTATCGCAA CTGCCATGGC CTGGGAACGT GAGACAACTC
GAGAATACCT GTCGCTGGCT CACGGTAATG GCCTCAGGGC AAGAAATCCT GCCCCAGGAT
TTACCCCAAG AGCTACTTAA AGAACCCGCC AGTATTAATC CTATGGCGAA AGGCAGCCAA
GATTGGCAAT CGGCACTCAC AGAGTGGATT GACCAAAAAC TGTCTGAGGG AAATAGCGAT
TTATTAACTG AGGTTCAGCC GGCCTTTGAA CGTATTTTGC TCGAAACCGC ATTACGCCAT
ACCCAAGGGC ATAAACAAGA AGCGGCAAAA CGTTTAGGTT GGGGAAGAAA TACCTTAACG
CGAAAACTCA AAGAATTGTC TATGGATTAA
|
|---|
| Protein sequence | MSEQVWILDD DSSIRWVLEK ALQGAKLSTA SFAAAESLWQ ALEISQPRVI VSDIRMPGTD
GLTLLERLQI HYPHIPVIIM TAHSDLDSAV SAYQAGAFEY LPKPFDIDEA ISLVERALTH
ATEQSPAPAA QETQVKTPEI IGEAPAMQEV FRAIGRLSRS SISVLINGQS GTGKELVAGA
LHKHSPRKDK PFIALNMAAI PKDLIESELF GHEKGAFTGA ANVRQGRFEQ ANGGTLFLDE
IGDMPLDVQT RLLRVLADGQ FYRVGGHSAV QVDVRIIAAT HQDLEQLVLK GGFREDLFHR
LNVIRVHLPP LSQRREDIPQ LATHFLASAA KEIGVEAKIL TKETAAKLSQ LPWPGNVRQL
ENTCRWLTVM ASGQEILPQD LPQELLKEPA SINPMAKGSQ DWQSALTEWI DQKLSEGNSD
LLTEVQPAFE RILLETALRH TQGHKQEAAK RLGWGRNTLT RKLKELSMD
|
|---|
| |