Gene Shewana3_0251 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewana3_0251 
Symbol 
ID4479159 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. ANA-3 
KingdomBacteria 
Replicon accessionNC_008577 
Strand
Start bp282029 
End bp283915 
Gene Length1887 bp 
Protein Length628 aa 
Translation table11 
GC content53% 
IMG OID639724783 
ProductFis family GAF modulated sigma54 specific transcriptional regulator 
Protein accessionYP_867900 
Protein GI117918708 
COG category[K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3284] Transcriptional activator of acetoin/glycerol metabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000000347396 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGGAGCAGC GCTCGGGGAG CTTGGCTATG ACAGTAAAAC TGCATTTTCC AACCACACAG 
GCATGGTTAA CCGATTCATG GCAGCGCAGC TTAGGTGCTG GCTTGTCAGA GTTTCGTGCC
GGTGAGGATC TCAGGCTCAC GCGTTCGGAG CTCAAATATA AACATGAGCA ATATCAGCAG
CTCATCGAAT TAGTACAATC CCACGCCTTG CCGCTATTTA ATCAACTGAT GGCGCACTCT
AATAGTCGAT TATTGCTCTC CGATGCCGAC GGTTATGTGC TGAAACATTG GGGGGTGAGC
CGCTATTCCA GCAAGCTGGC GGATGTGGCG CTCGATATTG GGGTCAACTG GCTCGAAAAG
TATAAGGGCA CCAATGCAAT AGGCACAGCG CTCACGGCCA AGCAGGCGGT GTCAGTGGTC
GGCGAGCAGC ATTTTATCCG CCAAAACCGT TTTATGAGTT GCACCGCTTG CCCGATTTTT
TCGCCCCAAG GTGAGATGCT CGGAGTGCTT GATATTACCA GTGAGCAGCA ACGGCATTCG
CAGCAAACCT TAATGCTAGT GTCGAGTCTG GCGCAGCAGG TCGAAACGGC GCTGCTGTGT
CATCTACCCG ATAGTCATTA TCGAATCGAT TTCGCGGCGC AGCCGAGTCT ATTAAATTCC
GGCTGGCAAG GCATAGTTAT CGCTAGCAGT GACGGGCGGA TTGTGGGTTG TAATCCCATG
GCGAAACAAC TGCTGAGCCA AGCCAAGTTG GGTGACAGTT TAGATCAACA CCTCGGCGAC
AATTGGGCGC GAGCGGGGGG CTTTCATCGC GATTCGGCGC TGCATGTGCA GACGCAAGCA
TTGGCACTGA CGCAGACGAA AAGTACCAGA ACCCTTCAAG ATAAACCCTT GAACCAATTG
GGTGTCAGGT TTCGTGACCC ATTACTTGAG CGTGCCTGGC AGCAGGCGAA CAAGGTGATC
ACTAAGCAAA TTCCTTTACT TGTGCTTGGC GAAACGGGTG TCGGTAAGGA GCAATTTGTG
AAAAAGCTCC ACGCCCAGAG TACCCGCCGC GCACAGCCCA TAGTTGCAGT AAATTGCGCC
GCCTTGCCCG CTGAGTTAGT TGAGTCTGAG TTATTTGGCT ATCAGGCGGG AGCTTTTACT
GGCGCCAATC GAACTGGTTT TATCGGTAAG ATCCGCCAGG CACACGGCGG CTTTTTGTTC
CTCGATGAAA TTGGCGAGAT GCCGCTAGCG GCGCAGAGTC GTTTACTCCG GGTGCTACAG
GAGCGCGAGG TGGTCCCCGT CGGCAGTAAT CAAAGTTTTA AGGTCGATAT TCAGATCATC
GCCGCGACCC ATATGGACTT AGAGTCGCTG GTGGCGCAGG GGTTGTTCCG TCAGGATTTG
TTTTATCGCC TGAATGGATT GCAGGTGCGG CTGCCTGCGC TGCGTGAGCG GCAGGATATT
GAGCGCATCA TCCATAAATT GCACCGCCGT CACCGCAGCA GCGCGCAAAC CTTGTGTACT
GAGCTGTTGG CGCAACTGAT GCGTTACGAT TGGCCCGGCA ACCTAAGGGA GCTGGATAAT
CTGATGCAGG TGGCTTGTTT GATGGCCGAA GGTGAAGCTG TACTCGAGAT CAATCATCTC
CCCGATTACC TTGCTCAAAA GCTAATGAAT CTGGCGTGTG AGCCCCAAAC TTTAACTGAG
GTTGCTGACG CAGAAGCTAC GGCGCATCCG CACGAGCTGG TTGAGTCTAG CTCCGTCACC
ATCGACTCGC TCCACGGAAC CATTAATCTG AATGTGTTGC AGGCTTACCG TGCCTGCGAT
GGCAATGTGA GCCAATGCGC CAAGCGTTTG GGGATTAGCC GTAATGCCTT GTATCGCAAG
TTAAAACAGC TAGGGATTAA GGATTAA
 
Protein sequence
MEQRSGSLAM TVKLHFPTTQ AWLTDSWQRS LGAGLSEFRA GEDLRLTRSE LKYKHEQYQQ 
LIELVQSHAL PLFNQLMAHS NSRLLLSDAD GYVLKHWGVS RYSSKLADVA LDIGVNWLEK
YKGTNAIGTA LTAKQAVSVV GEQHFIRQNR FMSCTACPIF SPQGEMLGVL DITSEQQRHS
QQTLMLVSSL AQQVETALLC HLPDSHYRID FAAQPSLLNS GWQGIVIASS DGRIVGCNPM
AKQLLSQAKL GDSLDQHLGD NWARAGGFHR DSALHVQTQA LALTQTKSTR TLQDKPLNQL
GVRFRDPLLE RAWQQANKVI TKQIPLLVLG ETGVGKEQFV KKLHAQSTRR AQPIVAVNCA
ALPAELVESE LFGYQAGAFT GANRTGFIGK IRQAHGGFLF LDEIGEMPLA AQSRLLRVLQ
EREVVPVGSN QSFKVDIQII AATHMDLESL VAQGLFRQDL FYRLNGLQVR LPALRERQDI
ERIIHKLHRR HRSSAQTLCT ELLAQLMRYD WPGNLRELDN LMQVACLMAE GEAVLEINHL
PDYLAQKLMN LACEPQTLTE VADAEATAHP HELVESSSVT IDSLHGTINL NVLQAYRACD
GNVSQCAKRL GISRNALYRK LKQLGIKD